miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5658 5' -55.9 NC_001806.1 + 136999 0.66 0.923718
Target:  5'- gGCGGCCGGCGgGgaGCGCCagcuaGACGg--- -3'
miRNA:   3'- -CGCCGGCUGUgCa-UGCGG-----CUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 95506 0.66 0.923718
Target:  5'- gGCGGCUGuACGCGgacCGCCuGACGa--- -3'
miRNA:   3'- -CGCCGGC-UGUGCau-GCGG-CUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 102274 0.66 0.918145
Target:  5'- cGCGGCggCGGCGCGguuUAUGUCGuCGUGg- -3'
miRNA:   3'- -CGCCG--GCUGUGC---AUGCGGCuGUACaa -5'
5658 5' -55.9 NC_001806.1 + 131878 0.66 0.918145
Target:  5'- gGCGGCCGcccgcgcCGCGacgACGCCGGCc---- -3'
miRNA:   3'- -CGCCGGCu------GUGCa--UGCGGCUGuacaa -5'
5658 5' -55.9 NC_001806.1 + 49261 0.66 0.917574
Target:  5'- gGCGGgCGACGagccgccCGUGCGCCGuCGa--- -3'
miRNA:   3'- -CGCCgGCUGU-------GCAUGCGGCuGUacaa -5'
5658 5' -55.9 NC_001806.1 + 114352 0.66 0.912333
Target:  5'- gGCGGCgccCGACGCGgGCGCCaACAc--- -3'
miRNA:   3'- -CGCCG---GCUGUGCaUGCGGcUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 9199 0.66 0.912333
Target:  5'- cGCGGgUGugGCGaggGCGCgguCGACGUGg- -3'
miRNA:   3'- -CGCCgGCugUGCa--UGCG---GCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 2178 0.66 0.912333
Target:  5'- aGC-GCCGACACGUcggggGCGCCGGu----- -3'
miRNA:   3'- -CGcCGGCUGUGCA-----UGCGGCUguacaa -5'
5658 5' -55.9 NC_001806.1 + 126130 0.66 0.912333
Target:  5'- cGCGGaCGACgGCGgcgaggccgGCGCCGACAc--- -3'
miRNA:   3'- -CGCCgGCUG-UGCa--------UGCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 23051 0.66 0.900005
Target:  5'- cGUGGCCGGCggcaGCG-AgGCCGcCGUGg- -3'
miRNA:   3'- -CGCCGGCUG----UGCaUgCGGCuGUACaa -5'
5658 5' -55.9 NC_001806.1 + 33304 0.66 0.899364
Target:  5'- aGCGGCCGGCcgGCGcuuagggggaggaUGuCGCCGACGc--- -3'
miRNA:   3'- -CGCCGGCUG--UGC-------------AU-GCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 84144 0.66 0.893492
Target:  5'- cGCGG--GGCACGcACGCgCGACGUGg- -3'
miRNA:   3'- -CGCCggCUGUGCaUGCG-GCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 4307 0.66 0.893492
Target:  5'- aGCGGcCCGugGCGUcGCGgCCGGCc---- -3'
miRNA:   3'- -CGCC-GGCugUGCA-UGC-GGCUGuacaa -5'
5658 5' -55.9 NC_001806.1 + 79543 0.67 0.879785
Target:  5'- cGCGGCCGGCGCccGUGgGCCcccgcGACGa--- -3'
miRNA:   3'- -CGCCGGCUGUG--CAUgCGG-----CUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 98237 0.67 0.879785
Target:  5'- uGCGGCUGACGCGcgaUGCGaUCGAgcCGUGc- -3'
miRNA:   3'- -CGCCGGCUGUGC---AUGC-GGCU--GUACaa -5'
5658 5' -55.9 NC_001806.1 + 37484 0.67 0.879785
Target:  5'- gGCGGUCGAUGCGgcccgaggauUGCCGGCAa--- -3'
miRNA:   3'- -CGCCGGCUGUGCau--------GCGGCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 55729 0.67 0.872599
Target:  5'- gGCGGCUGACcCGggggACcCCGAUGUGg- -3'
miRNA:   3'- -CGCCGGCUGuGCa---UGcGGCUGUACaa -5'
5658 5' -55.9 NC_001806.1 + 147756 0.67 0.872599
Target:  5'- cGCGGgucCCGACGCGgcCGCgGACGc--- -3'
miRNA:   3'- -CGCC---GGCUGUGCauGCGgCUGUacaa -5'
5658 5' -55.9 NC_001806.1 + 78263 0.67 0.872599
Target:  5'- cGCGGCUGGCAgacugGCGCCGcgGCAaGUUg -3'
miRNA:   3'- -CGCCGGCUGUgca--UGCGGC--UGUaCAA- -5'
5658 5' -55.9 NC_001806.1 + 79674 0.67 0.872599
Target:  5'- -gGGUCG-CGCGcGCGCCGACAc--- -3'
miRNA:   3'- cgCCGGCuGUGCaUGCGGCUGUacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.