Results 21 - 40 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5664 | 3' | -51.8 | NC_001806.1 | + | 102039 | 0.66 | 0.975188 |
Target: 5'- --cUCCgcucuugaugGCCCCCGAGucGGacccgGAGGCCCCa -3' miRNA: 3'- uuuAGG----------UGGGGGUUU--CCg----UUUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 19152 | 0.66 | 0.977743 |
Target: 5'- ---cCCGCCCCaucuuAGGaaaaauAACCCCa -3' miRNA: 3'- uuuaGGUGGGGguu--UCCguu---UUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 62689 | 0.66 | 0.980098 |
Target: 5'- ---aUCACCUCCAgGAGGCGcu-UCCCg -3' miRNA: 3'- uuuaGGUGGGGGU-UUCCGUuuuGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 120802 | 0.66 | 0.986056 |
Target: 5'- -cGUUgGCCCCCGccucuGGGGUuu-GCCCUc -3' miRNA: 3'- uuUAGgUGGGGGU-----UUCCGuuuUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 57659 | 0.66 | 0.977743 |
Target: 5'- ---gCCcCCCCgGAAGGCGGAgaagGCgCCg -3' miRNA: 3'- uuuaGGuGGGGgUUUCCGUUU----UGgGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 102936 | 0.66 | 0.982263 |
Target: 5'- --cUCCAUCUCCGcgacGGCcAGACCCg -3' miRNA: 3'- uuuAGGUGGGGGUuu--CCGuUUUGGGg -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 2713 | 0.66 | 0.980098 |
Target: 5'- ---gCCAgCCgCCCAGGGGguCGGGGCCCUc -3' miRNA: 3'- uuuaGGU-GG-GGGUUUCC--GUUUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 50947 | 0.66 | 0.974921 |
Target: 5'- ---cCCggGCCCCCGuguccggGAcGGCA-GACCCCg -3' miRNA: 3'- uuuaGG--UGGGGGU-------UU-CCGUuUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 12322 | 0.66 | 0.980098 |
Target: 5'- --cUCCACUacgCCGucGGGCcccAAGGCCCCg -3' miRNA: 3'- uuuAGGUGGg--GGUu-UCCG---UUUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 81743 | 0.66 | 0.975188 |
Target: 5'- ---aCCACCCaCCAAAuaGCG--GCCCCc -3' miRNA: 3'- uuuaGGUGGG-GGUUUc-CGUuuUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 295 | 0.66 | 0.982263 |
Target: 5'- ---cCCGCUCCCGc-GGCcccGCCCCc -3' miRNA: 3'- uuuaGGUGGGGGUuuCCGuuuUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 45759 | 0.66 | 0.984246 |
Target: 5'- ---aCCACCCCCGccGuCcGAACCCa -3' miRNA: 3'- uuuaGGUGGGGGUuuCcGuUUUGGGg -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 7342 | 0.66 | 0.984246 |
Target: 5'- ---cCCAgagaCCCCAGGGuaccGCGuGACCCCa -3' miRNA: 3'- uuuaGGUg---GGGGUUUC----CGUuUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 96540 | 0.66 | 0.982263 |
Target: 5'- ---cCCGCCCCU---GGCGcccCCCCa -3' miRNA: 3'- uuuaGGUGGGGGuuuCCGUuuuGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 70153 | 0.66 | 0.980098 |
Target: 5'- ---aCCGgCCgCCcGGGGCGGccucGGCCCCa -3' miRNA: 3'- uuuaGGUgGG-GGuUUCCGUU----UUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 132680 | 0.66 | 0.975188 |
Target: 5'- ----gCGCUCCUggGGGCcuGGCCCg -3' miRNA: 3'- uuuagGUGGGGGuuUCCGuuUUGGGg -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 59293 | 0.66 | 0.980098 |
Target: 5'- uAAAUaCGCCCCCAGcucguuAGGCcacACCCUu -3' miRNA: 3'- -UUUAgGUGGGGGUU------UCCGuuuUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 112334 | 0.66 | 0.982263 |
Target: 5'- ---gCCACCgCCgGGAGGCcgucGAGGCCUg -3' miRNA: 3'- uuuaGGUGG-GGgUUUCCG----UUUUGGGg -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 128062 | 0.66 | 0.982263 |
Target: 5'- ---aCgGCCCCC--AGGUggGGgCCCa -3' miRNA: 3'- uuuaGgUGGGGGuuUCCGuuUUgGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 152005 | 0.66 | 0.982263 |
Target: 5'- ---cCCGCUCCCGc-GGCcccGCCCCc -3' miRNA: 3'- uuuaGGUGGGGGUuuCCGuuuUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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