miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 3' -51.8 NC_001806.1 + 102039 0.66 0.975188
Target:  5'- --cUCCgcucuugaugGCCCCCGAGucGGacccgGAGGCCCCa -3'
miRNA:   3'- uuuAGG----------UGGGGGUUU--CCg----UUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 132680 0.66 0.975188
Target:  5'- ----gCGCUCCUggGGGCcuGGCCCg -3'
miRNA:   3'- uuuagGUGGGGGuuUCCGuuUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 23595 0.66 0.980098
Target:  5'- ---gCCGCCgCCCuGGAGGCcuacugcuCCCCg -3'
miRNA:   3'- uuuaGGUGG-GGG-UUUCCGuuuu----GGGG- -5'
5664 3' -51.8 NC_001806.1 + 120802 0.66 0.986056
Target:  5'- -cGUUgGCCCCCGccucuGGGGUuu-GCCCUc -3'
miRNA:   3'- uuUAGgUGGGGGU-----UUCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 56268 0.66 0.976997
Target:  5'- ---cCCGUCCCCGGgguccuuccugugcAGGCGAcgccggAGCCCCa -3'
miRNA:   3'- uuuaGGUGGGGGUU--------------UCCGUU------UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 100118 0.66 0.977743
Target:  5'- ---aCCGCCCgCCu--GGCGGuccgcggcuauGGCCCCc -3'
miRNA:   3'- uuuaGGUGGG-GGuuuCCGUU-----------UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 48517 0.66 0.977743
Target:  5'- --cUCCGCCCCCuacGGC---GCUCUg -3'
miRNA:   3'- uuuAGGUGGGGGuuuCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 78516 0.66 0.979872
Target:  5'- gGAAUCUgggcagacgcugaGCCCCuCGggggggcgcGAGGCGucACCCCc -3'
miRNA:   3'- -UUUAGG-------------UGGGG-GU---------UUCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 143679 0.66 0.974652
Target:  5'- ---cCCGCCCCC--GGGaccccacauauAAGCCCCc -3'
miRNA:   3'- uuuaGGUGGGGGuuUCCgu---------UUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 10003 0.66 0.975188
Target:  5'- ---gCCAgCCCCGGgacGGGCuccauguGAGCCUCg -3'
miRNA:   3'- uuuaGGUgGGGGUU---UCCGu------UUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 82145 0.66 0.977743
Target:  5'- -uGUCCAggUCgCCGAGGGac-AGCCCCg -3'
miRNA:   3'- uuUAGGU--GGgGGUUUCCguuUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 83006 0.66 0.977743
Target:  5'- ---cCCGCCCagCCAu-GGCAAcuucGCCCCc -3'
miRNA:   3'- uuuaGGUGGG--GGUuuCCGUUu---UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 2713 0.66 0.980098
Target:  5'- ---gCCAgCCgCCCAGGGGguCGGGGCCCUc -3'
miRNA:   3'- uuuaGGU-GG-GGGUUUCC--GUUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 123003 0.66 0.975188
Target:  5'- ---aUCGCCgCCCAu-GGUGAGGCCCg -3'
miRNA:   3'- uuuaGGUGG-GGGUuuCCGUUUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 81743 0.66 0.975188
Target:  5'- ---aCCACCCaCCAAAuaGCG--GCCCCc -3'
miRNA:   3'- uuuaGGUGGG-GGUUUc-CGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 101598 0.66 0.977743
Target:  5'- ---aCCACCCaCUAAaccgccgacAGGUAcuguggaauGAACCCCa -3'
miRNA:   3'- uuuaGGUGGG-GGUU---------UCCGU---------UUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 12322 0.66 0.980098
Target:  5'- --cUCCACUacgCCGucGGGCcccAAGGCCCCg -3'
miRNA:   3'- uuuAGGUGGg--GGUu-UCCG---UUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 19152 0.66 0.977743
Target:  5'- ---cCCGCCCCaucuuAGGaaaaauAACCCCa -3'
miRNA:   3'- uuuaGGUGGGGguu--UCCguu---UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 2449 0.66 0.977743
Target:  5'- aGAggCgGCCCCC---GGCG--GCCCCg -3'
miRNA:   3'- -UUuaGgUGGGGGuuuCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 57659 0.66 0.977743
Target:  5'- ---gCCcCCCCgGAAGGCGGAgaagGCgCCg -3'
miRNA:   3'- uuuaGGuGGGGgUUUCCGUUU----UGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.