miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 3' -51.8 NC_001806.1 + 120802 0.66 0.986056
Target:  5'- -cGUUgGCCCCCGccucuGGGGUuu-GCCCUc -3'
miRNA:   3'- uuUAGgUGGGGGU-----UUCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 132503 0.77 0.528115
Target:  5'- ---gCCGCCCCC-GGGGCccuGGCCCCc -3'
miRNA:   3'- uuuaGGUGGGGGuUUCCGuu-UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 63110 0.77 0.53842
Target:  5'- cAGAUCCAgCCCCAGcuucAGGCAggccgugugcAGGCCCUg -3'
miRNA:   3'- -UUUAGGUgGGGGUU----UCCGU----------UUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 80206 0.77 0.53842
Target:  5'- ---cCCGCCCCCGAcgucAGGCcc-GCCCCc -3'
miRNA:   3'- uuuaGGUGGGGGUU----UCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 13793 0.77 0.548793
Target:  5'- aAAAUCacgGCCCCCAAccuGGCGGcAGCCCCc -3'
miRNA:   3'- -UUUAGg--UGGGGGUUu--CCGUU-UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 82214 0.77 0.55296
Target:  5'- uAAUCgCGCCCCCGGGGGCGuugugugggcgaugaAaaAACCCCu -3'
miRNA:   3'- uUUAG-GUGGGGGUUUCCGU---------------U--UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 37942 0.76 0.569717
Target:  5'- -cGUCCACCCCgCcccGGGGCGGggUCCCc -3'
miRNA:   3'- uuUAGGUGGGG-Gu--UUCCGUUuuGGGG- -5'
5664 3' -51.8 NC_001806.1 + 150706 0.76 0.590831
Target:  5'- ---cCCGCCCCC-GAGGCGGcccGCCCUg -3'
miRNA:   3'- uuuaGGUGGGGGuUUCCGUUu--UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 22714 0.76 0.601441
Target:  5'- ---gCCuCCCCCGcggGGGGCGAcGACCCCg -3'
miRNA:   3'- uuuaGGuGGGGGU---UUCCGUU-UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 35191 0.77 0.517884
Target:  5'- ---cCCAUUCCCGAAGGCGuAGCCCg -3'
miRNA:   3'- uuuaGGUGGGGGUUUCCGUuUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 81916 0.77 0.517884
Target:  5'- ---gCCACCCCCAGcccGGCcucGGCCCCg -3'
miRNA:   3'- uuuaGGUGGGGGUUu--CCGuu-UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 121226 0.78 0.497667
Target:  5'- -cGUCCACCUCCGGAGcGUGAcgcacccccuGACCCCg -3'
miRNA:   3'- uuUAGGUGGGGGUUUC-CGUU----------UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 38696 0.87 0.149297
Target:  5'- --uUCCGCCCCCc-GGGCGGGGCCCCc -3'
miRNA:   3'- uuuAGGUGGGGGuuUCCGUUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 43284 0.87 0.157465
Target:  5'- --uUCCGCCCUCGGAGGCGGAGCCgCg -3'
miRNA:   3'- uuuAGGUGGGGGUUUCCGUUUUGGgG- -5'
5664 3' -51.8 NC_001806.1 + 69920 0.84 0.220981
Target:  5'- ---cCCGCCCUCGAGGGCAuucACCCCa -3'
miRNA:   3'- uuuaGGUGGGGGUUUCCGUuu-UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 74287 0.8 0.368023
Target:  5'- ---cCCGCCCCCGAucGCGAccAGCCCCa -3'
miRNA:   3'- uuuaGGUGGGGGUUucCGUU--UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 135531 0.8 0.402676
Target:  5'- cAGGUCCGCCCCCGcAGGGCGGcuGCCgCa -3'
miRNA:   3'- -UUUAGGUGGGGGU-UUCCGUUu-UGGgG- -5'
5664 3' -51.8 NC_001806.1 + 127274 0.79 0.429986
Target:  5'- -----gACCCCCGGAGGCGccuGCCCCg -3'
miRNA:   3'- uuuaggUGGGGGUUUCCGUuu-UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 30456 0.78 0.468031
Target:  5'- cGGcgCCGCCCCCuccGGCGccGCCCCg -3'
miRNA:   3'- -UUuaGGUGGGGGuuuCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 120834 0.78 0.477811
Target:  5'- ---cCCGCCCCCGGcauGGCGcagcugGGACCCCg -3'
miRNA:   3'- uuuaGGUGGGGGUUu--CCGU------UUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.