Results 1 - 20 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5664 | 3' | -51.8 | NC_001806.1 | + | 73025 | 1.09 | 0.005927 |
Target: 5'- gAAAUCCACCCCCAAAGGCAAAACCCCc -3' miRNA: 3'- -UUUAGGUGGGGGUUUCCGUUUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 38696 | 0.87 | 0.149297 |
Target: 5'- --uUCCGCCCCCc-GGGCGGGGCCCCc -3' miRNA: 3'- uuuAGGUGGGGGuuUCCGUUUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 43284 | 0.87 | 0.157465 |
Target: 5'- --uUCCGCCCUCGGAGGCGGAGCCgCg -3' miRNA: 3'- uuuAGGUGGGGGUUUCCGUUUUGGgG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 69920 | 0.84 | 0.220981 |
Target: 5'- ---cCCGCCCUCGAGGGCAuucACCCCa -3' miRNA: 3'- uuuaGGUGGGGGUUUCCGUuu-UGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 74287 | 0.8 | 0.368023 |
Target: 5'- ---cCCGCCCCCGAucGCGAccAGCCCCa -3' miRNA: 3'- uuuaGGUGGGGGUUucCGUU--UUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 135531 | 0.8 | 0.402676 |
Target: 5'- cAGGUCCGCCCCCGcAGGGCGGcuGCCgCa -3' miRNA: 3'- -UUUAGGUGGGGGU-UUCCGUUu-UGGgG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 127274 | 0.79 | 0.429986 |
Target: 5'- -----gACCCCCGGAGGCGccuGCCCCg -3' miRNA: 3'- uuuaggUGGGGGUUUCCGUuu-UGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 30456 | 0.78 | 0.468031 |
Target: 5'- cGGcgCCGCCCCCuccGGCGccGCCCCg -3' miRNA: 3'- -UUuaGGUGGGGGuuuCCGUuuUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 120834 | 0.78 | 0.477811 |
Target: 5'- ---cCCGCCCCCGGcauGGCGcagcugGGACCCCg -3' miRNA: 3'- uuuaGGUGGGGGUUu--CCGU------UUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 121226 | 0.78 | 0.497667 |
Target: 5'- -cGUCCACCUCCGGAGcGUGAcgcacccccuGACCCCg -3' miRNA: 3'- uuUAGGUGGGGGUUUC-CGUU----------UUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 35191 | 0.77 | 0.517884 |
Target: 5'- ---cCCAUUCCCGAAGGCGuAGCCCg -3' miRNA: 3'- uuuaGGUGGGGGUUUCCGUuUUGGGg -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 81916 | 0.77 | 0.517884 |
Target: 5'- ---gCCACCCCCAGcccGGCcucGGCCCCg -3' miRNA: 3'- uuuaGGUGGGGGUUu--CCGuu-UUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 132503 | 0.77 | 0.528115 |
Target: 5'- ---gCCGCCCCC-GGGGCccuGGCCCCc -3' miRNA: 3'- uuuaGGUGGGGGuUUCCGuu-UUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 63110 | 0.77 | 0.53842 |
Target: 5'- cAGAUCCAgCCCCAGcuucAGGCAggccgugugcAGGCCCUg -3' miRNA: 3'- -UUUAGGUgGGGGUU----UCCGU----------UUUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 80206 | 0.77 | 0.53842 |
Target: 5'- ---cCCGCCCCCGAcgucAGGCcc-GCCCCc -3' miRNA: 3'- uuuaGGUGGGGGUU----UCCGuuuUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 13793 | 0.77 | 0.548793 |
Target: 5'- aAAAUCacgGCCCCCAAccuGGCGGcAGCCCCc -3' miRNA: 3'- -UUUAGg--UGGGGGUUu--CCGUU-UUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 82214 | 0.77 | 0.55296 |
Target: 5'- uAAUCgCGCCCCCGGGGGCGuugugugggcgaugaAaaAACCCCu -3' miRNA: 3'- uUUAG-GUGGGGGUUUCCGU---------------U--UUGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 37942 | 0.76 | 0.569717 |
Target: 5'- -cGUCCACCCCgCcccGGGGCGGggUCCCc -3' miRNA: 3'- uuUAGGUGGGG-Gu--UUCCGUUuuGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 150706 | 0.76 | 0.590831 |
Target: 5'- ---cCCGCCCCC-GAGGCGGcccGCCCUg -3' miRNA: 3'- uuuaGGUGGGGGuUUCCGUUu--UGGGG- -5' |
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5664 | 3' | -51.8 | NC_001806.1 | + | 5948 | 0.76 | 0.601441 |
Target: 5'- ---aCCGCCCCaagGGGGCGGGGCCgCCg -3' miRNA: 3'- uuuaGGUGGGGgu-UUCCGUUUUGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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