miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 3' -51.8 NC_001806.1 + 295 0.66 0.982263
Target:  5'- ---cCCGCUCCCGc-GGCcccGCCCCc -3'
miRNA:   3'- uuuaGGUGGGGGUuuCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 802 0.71 0.850164
Target:  5'- gAGAUCCAaacCCUCCGGGGGC---GCCCg -3'
miRNA:   3'- -UUUAGGU---GGGGGUUUCCGuuuUGGGg -5'
5664 3' -51.8 NC_001806.1 + 1359 0.7 0.888546
Target:  5'- --cUCCGCCCCCAGcaccucCAcgGCCCCc -3'
miRNA:   3'- uuuAGGUGGGGGUUucc---GUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 1432 0.68 0.946689
Target:  5'- cGAAUCCcgggcGgCgCCGgcGGCAGGGCCCCc -3'
miRNA:   3'- -UUUAGG-----UgGgGGUuuCCGUUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 2117 0.69 0.926523
Target:  5'- --cUCCACggCCCCGgcgAAGGCcAggUCCCg -3'
miRNA:   3'- uuuAGGUG--GGGGU---UUCCGuUuuGGGG- -5'
5664 3' -51.8 NC_001806.1 + 2449 0.66 0.977743
Target:  5'- aGAggCgGCCCCC---GGCG--GCCCCg -3'
miRNA:   3'- -UUuaGgUGGGGGuuuCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 2713 0.66 0.980098
Target:  5'- ---gCCAgCCgCCCAGGGGguCGGGGCCCUc -3'
miRNA:   3'- uuuaGGU-GG-GGGUUUCC--GUUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 3532 0.71 0.847682
Target:  5'- ---gUCGCCCCCcgcgggGGAGGCGGGcgcggcggacagccGCCCCa -3'
miRNA:   3'- uuuaGGUGGGGG------UUUCCGUUU--------------UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 4175 0.73 0.748453
Target:  5'- ---cCCG-CCCCGGGGGCGGGGgCCCg -3'
miRNA:   3'- uuuaGGUgGGGGUUUCCGUUUUgGGG- -5'
5664 3' -51.8 NC_001806.1 + 4390 0.69 0.914888
Target:  5'- ---gCCGCCgCCCGGggcuuGGGCGcgGCCUCg -3'
miRNA:   3'- uuuaGGUGG-GGGUU-----UCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 5042 0.7 0.888546
Target:  5'- --cUCCGCgCCCCAcccgAGGGCc---CCCCg -3'
miRNA:   3'- uuuAGGUG-GGGGU----UUCCGuuuuGGGG- -5'
5664 3' -51.8 NC_001806.1 + 5528 0.76 0.612076
Target:  5'- ---cCCGCCCCCcc-GGCGGGcccACCCCg -3'
miRNA:   3'- uuuaGGUGGGGGuuuCCGUUU---UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 5948 0.76 0.601441
Target:  5'- ---aCCGCCCCaagGGGGCGGGGCCgCCg -3'
miRNA:   3'- uuuaGGUGGGGgu-UUCCGUUUUGG-GG- -5'
5664 3' -51.8 NC_001806.1 + 6070 0.72 0.806444
Target:  5'- ---gCCGgCCCCGGGGGC-GGGCCCg -3'
miRNA:   3'- uuuaGGUgGGGGUUUCCGuUUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 6340 0.67 0.969447
Target:  5'- ----aCGCaCCCCGGGGGCcuccgacgacaGAAACCCa -3'
miRNA:   3'- uuuagGUG-GGGGUUUCCG-----------UUUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 7076 0.68 0.945319
Target:  5'- -cGUCCGCcggcaugcaCCCCAGAGGUguucacgcaccucgAGGACaCCCg -3'
miRNA:   3'- uuUAGGUG---------GGGGUUUCCG--------------UUUUG-GGG- -5'
5664 3' -51.8 NC_001806.1 + 7342 0.66 0.984246
Target:  5'- ---cCCAgagaCCCCAGGGuaccGCGuGACCCCa -3'
miRNA:   3'- uuuaGGUg---GGGGUUUC----CGUuUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 7373 0.68 0.936108
Target:  5'- gGGAUCCACgacaaccccggucUCCCAGGGaGCcccggucuccccgGGAGCCCCg -3'
miRNA:   3'- -UUUAGGUG-------------GGGGUUUC-CG-------------UUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 7501 0.68 0.946689
Target:  5'- cAAGUaUGCCCCCcu-GGCGAgcccaGACCCCu -3'
miRNA:   3'- -UUUAgGUGGGGGuuuCCGUU-----UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 7789 0.68 0.937122
Target:  5'- ---cCCGCCCCCGgcuacaGGGGCcauguuGGGCCgCCa -3'
miRNA:   3'- uuuaGGUGGGGGU------UUCCGu-----UUUGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.