miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 5' -62.6 NC_001806.1 + 27864 0.67 0.583527
Target:  5'- cCCGCGGUgggCCUGCCUCCc--CUGGGa -3'
miRNA:   3'- -GGCGCCAg--GGGCGGAGGcaaGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 28706 0.76 0.196998
Target:  5'- gCCGUGGgacCCCCGaCUCCGgugcgUCUGGAGg -3'
miRNA:   3'- -GGCGCCa--GGGGCgGAGGCa----AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 30232 0.67 0.616066
Target:  5'- gCCGUGG-CCCCgugcgugcgagcgccGCCUCCGgggcCCGGc- -3'
miRNA:   3'- -GGCGCCaGGGG---------------CGGAGGCaa--GGCCuc -5'
5664 5' -62.6 NC_001806.1 + 30736 0.69 0.490627
Target:  5'- cCCGCGGgggCCgCCuCUUCCGccgCCGGGGc -3'
miRNA:   3'- -GGCGCCa--GG-GGcGGAGGCaa-GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 31107 0.66 0.660236
Target:  5'- gCCGCGGUCCCCGgCUggagCCG--CCGc-- -3'
miRNA:   3'- -GGCGCCAGGGGC-GGa---GGCaaGGCcuc -5'
5664 5' -62.6 NC_001806.1 + 31283 0.74 0.271133
Target:  5'- cCUGCGGUCUCgGCaC-CCGUggUCCGGGGa -3'
miRNA:   3'- -GGCGCCAGGGgCG-GaGGCA--AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 33168 0.66 0.660236
Target:  5'- aCGCGGcCUUCGCC-CCGUga-GGGGa -3'
miRNA:   3'- gGCGCCaGGGGCGGaGGCAaggCCUC- -5'
5664 5' -62.6 NC_001806.1 + 42634 0.66 0.660236
Target:  5'- gCCGCGGcggCgUCGCgUCCGgUgCGGGGg -3'
miRNA:   3'- -GGCGCCa--GgGGCGgAGGCaAgGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 43145 0.66 0.679347
Target:  5'- cCCGCGGUUCCCGUCUUCcugCCc--- -3'
miRNA:   3'- -GGCGCCAGGGGCGGAGGcaaGGccuc -5'
5664 5' -62.6 NC_001806.1 + 43686 0.68 0.545715
Target:  5'- cCCuuGGccUCUCCGCCUUCGggguugCCGGGGg -3'
miRNA:   3'- -GGcgCC--AGGGGCGGAGGCaa----GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 44448 0.67 0.602639
Target:  5'- gCCGCGGgCCCgGCgUCCGcguggagcaUgCGGAGg -3'
miRNA:   3'- -GGCGCCaGGGgCGgAGGCa--------AgGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 44903 0.67 0.631436
Target:  5'- uCCGCGGUCCCCGagucgauaagacCCaguauuaCGUggugcCCGGGGc -3'
miRNA:   3'- -GGCGCCAGGGGC------------GGag-----GCAa----GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 46058 0.67 0.631436
Target:  5'- cCCGgaGGUCCCCcggacgcggcGUC-CCGUUuCCGGGGc -3'
miRNA:   3'- -GGCg-CCAGGGG----------CGGaGGCAA-GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 46119 0.73 0.289683
Target:  5'- gCGCGGgcgCCuCCGCCacCCGcugggUCCGGAGg -3'
miRNA:   3'- gGCGCCa--GG-GGCGGa-GGCa----AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 49434 0.69 0.472833
Target:  5'- cCCGCGGUCCuCCGCaggcCCGgca-GGGGg -3'
miRNA:   3'- -GGCGCCAGG-GGCGga--GGCaaggCCUC- -5'
5664 5' -62.6 NC_001806.1 + 49599 0.66 0.668849
Target:  5'- gCgGCGGggcccguUCCCCGCC-CaagguggagGUUCUGGAGg -3'
miRNA:   3'- -GgCGCC-------AGGGGCGGaGg--------CAAGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 50181 0.7 0.446771
Target:  5'- gCUGgGGUCCCUGCUguaCUGgcCCGGGGu -3'
miRNA:   3'- -GGCgCCAGGGGCGGa--GGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 50917 0.67 0.612227
Target:  5'- aCGUGGaucugcgCCCCGCCUCCucagcgccCCGGGc -3'
miRNA:   3'- gGCGCCa------GGGGCGGAGGcaa-----GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 52554 0.67 0.612227
Target:  5'- uCCGCGGggccUCCCCcggacgacaugGCCagCGgcCCGGGGg -3'
miRNA:   3'- -GGCGCC----AGGGG-----------CGGagGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 52735 0.69 0.51421
Target:  5'- gCGCGGggcCCCCGCUUCCGgaugcgaacgacCCGGu- -3'
miRNA:   3'- gGCGCCa--GGGGCGGAGGCaa----------GGCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.