miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 5' -62.6 NC_001806.1 + 1544 0.75 0.236915
Target:  5'- uCCGCGG-CCCgCGCCaCCGggCCGGGc -3'
miRNA:   3'- -GGCGCCaGGG-GCGGaGGCaaGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 2670 0.68 0.555103
Target:  5'- gCCGCGGgCgCCGCCguguggCUGggccCCGGGGg -3'
miRNA:   3'- -GGCGCCaGgGGCGGa-----GGCaa--GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 2923 0.77 0.17103
Target:  5'- gUCGCGGgCCgCCGCCUCCGggcggCCGGGc -3'
miRNA:   3'- -GGCGCCaGG-GGCGGAGGCaa---GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 3970 0.74 0.263985
Target:  5'- gCGCGGguucuggagccaCCCCagGCCUCCGcgUCCGGGGu -3'
miRNA:   3'- gGCGCCa-----------GGGG--CGGAGGCa-AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 4375 0.73 0.283391
Target:  5'- gCCGCGGgggUCCUCGCCgCCGc-CCGGGGc -3'
miRNA:   3'- -GGCGCC---AGGGGCGGaGGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 5726 0.77 0.159228
Target:  5'- uCCgGCGGUUUCCGCUUCCGUUCCGcaugcuaacGAGg -3'
miRNA:   3'- -GG-CGCCAGGGGCGGAGGCAAGGC---------CUC- -5'
5664 5' -62.6 NC_001806.1 + 5853 0.66 0.679347
Target:  5'- cCCcCGGU-CCCGCCcgCCGgacgCCGGGa -3'
miRNA:   3'- -GGcGCCAgGGGCGGa-GGCaa--GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 7580 0.68 0.536379
Target:  5'- aCCGCGGUUCgCGUC-CCGcccaCCGGAa -3'
miRNA:   3'- -GGCGCCAGGgGCGGaGGCaa--GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 20377 0.71 0.389246
Target:  5'- cCCGuUGGUCCCgGCgUCCGgcgggcgggaCCGGGGg -3'
miRNA:   3'- -GGC-GCCAGGGgCGgAGGCaa--------GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 21057 0.67 0.59307
Target:  5'- aCCGUGcuacGUCCgCCGUCgcagCCGUauccCCGGAGg -3'
miRNA:   3'- -GGCGC----CAGG-GGCGGa---GGCAa---GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 21419 0.67 0.59307
Target:  5'- cCCGCGG-CCUCGCCgCC---CCGGAc -3'
miRNA:   3'- -GGCGCCaGGGGCGGaGGcaaGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 22615 0.67 0.583527
Target:  5'- gCCGCcGUCgCCGCCgCCGcaCCGGGc -3'
miRNA:   3'- -GGCGcCAGgGGCGGaGGCaaGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 22646 0.69 0.48169
Target:  5'- gCGCGGUgCCCGCCggguaCGgcgCCGcGGGg -3'
miRNA:   3'- gGCGCCAgGGGCGGag---GCaa-GGC-CUC- -5'
5664 5' -62.6 NC_001806.1 + 22930 0.7 0.421528
Target:  5'- cCCGCGGgCCCCGCUUCCccgCCGc-- -3'
miRNA:   3'- -GGCGCCaGGGGCGGAGGcaaGGCcuc -5'
5664 5' -62.6 NC_001806.1 + 23252 0.68 0.545715
Target:  5'- -gGCGGccgCCgCCGCCUCCGccgcgCCGcGGGa -3'
miRNA:   3'- ggCGCCa--GG-GGCGGAGGCaa---GGC-CUC- -5'
5664 5' -62.6 NC_001806.1 + 24116 0.66 0.650646
Target:  5'- aCGCGGgaCCUgGCCUUCG--CCGGGGc -3'
miRNA:   3'- gGCGCCa-GGGgCGGAGGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 24799 0.66 0.660236
Target:  5'- cCCGgGGgCCCUGCCgCCGgcgccgcCCGGGa -3'
miRNA:   3'- -GGCgCCaGGGGCGGaGGCaa-----GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 26397 0.73 0.302594
Target:  5'- aUCGCGGcCCCCGCCgcccCCGgccgcCCGGGc -3'
miRNA:   3'- -GGCGCCaGGGGCGGa---GGCaa---GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 26504 0.74 0.271133
Target:  5'- cCCGCGGccgCCCCGCCgCCGccccccgCCGGuGg -3'
miRNA:   3'- -GGCGCCa--GGGGCGGaGGCaa-----GGCCuC- -5'
5664 5' -62.6 NC_001806.1 + 27150 0.65 0.696433
Target:  5'- uCCGCGGagcucccgggagCUCCGCaccaagCCGcucUCCGGAGa -3'
miRNA:   3'- -GGCGCCa-----------GGGGCGga----GGCa--AGGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.