miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 5' -62.6 NC_001806.1 + 73059 1.08 0.001064
Target:  5'- gCCGCGGUCCCCGCCUCCGUUCCGGAGc -3'
miRNA:   3'- -GGCGCCAGGGGCGGAGGCAAGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 5726 0.77 0.159228
Target:  5'- uCCgGCGGUUUCCGCUUCCGUUCCGcaugcuaacGAGg -3'
miRNA:   3'- -GG-CGCCAGGGGCGGAGGCAAGGC---------CUC- -5'
5664 5' -62.6 NC_001806.1 + 2923 0.77 0.17103
Target:  5'- gUCGCGGgCCgCCGCCUCCGggcggCCGGGc -3'
miRNA:   3'- -GGCGCCaGG-GGCGGAGGCaa---GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 28706 0.76 0.196998
Target:  5'- gCCGUGGgacCCCCGaCUCCGgugcgUCUGGAGg -3'
miRNA:   3'- -GGCGCCa--GGGGCgGAGGCa----AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 1544 0.75 0.236915
Target:  5'- uCCGCGG-CCCgCGCCaCCGggCCGGGc -3'
miRNA:   3'- -GGCGCCaGGG-GCGGaGGCaaGGCCUc -5'
5664 5' -62.6 NC_001806.1 + 3970 0.74 0.263985
Target:  5'- gCGCGGguucuggagccaCCCCagGCCUCCGcgUCCGGGGu -3'
miRNA:   3'- gGCGCCa-----------GGGG--CGGAGGCa-AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 26504 0.74 0.271133
Target:  5'- cCCGCGGccgCCCCGCCgCCGccccccgCCGGuGg -3'
miRNA:   3'- -GGCGCCa--GGGGCGGaGGCaa-----GGCCuC- -5'
5664 5' -62.6 NC_001806.1 + 31283 0.74 0.271133
Target:  5'- cCUGCGGUCUCgGCaC-CCGUggUCCGGGGa -3'
miRNA:   3'- -GGCGCCAGGGgCG-GaGGCA--AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 4375 0.73 0.283391
Target:  5'- gCCGCGGgggUCCUCGCCgCCGc-CCGGGGc -3'
miRNA:   3'- -GGCGCC---AGGGGCGGaGGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 46119 0.73 0.289683
Target:  5'- gCGCGGgcgCCuCCGCCacCCGcugggUCCGGAGg -3'
miRNA:   3'- gGCGCCa--GG-GGCGGa-GGCa----AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 26397 0.73 0.302594
Target:  5'- aUCGCGGcCCCCGCCgcccCCGgccgcCCGGGc -3'
miRNA:   3'- -GGCGCCaGGGGCGGa---GGCaa---GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 150761 0.73 0.315944
Target:  5'- gCGCGGcUCCUGCCaUCGUcucUCCGGAGa -3'
miRNA:   3'- gGCGCCaGGGGCGGaGGCA---AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 112869 0.72 0.339648
Target:  5'- gCCGCGcacgccggggaccuaGUCCCCGCCcCCGgccacCCGGAu -3'
miRNA:   3'- -GGCGC---------------CAGGGGCGGaGGCaa---GGCCUc -5'
5664 5' -62.6 NC_001806.1 + 147656 0.71 0.363111
Target:  5'- uCCGCGGggcgggcggccggCUCCGCC-CCGggggCCGGGGc -3'
miRNA:   3'- -GGCGCCa------------GGGGCGGaGGCaa--GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 20377 0.71 0.389246
Target:  5'- cCCGuUGGUCCCgGCgUCCGgcgggcgggaCCGGGGg -3'
miRNA:   3'- -GGC-GCCAGGGgCGgAGGCaa--------GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 91039 0.71 0.403572
Target:  5'- -gGCGGguucgaacagcgCCUgGCCUCCGUcauggCCGGAGa -3'
miRNA:   3'- ggCGCCa-----------GGGgCGGAGGCAa----GGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 129684 0.71 0.405184
Target:  5'- -aGCGG--CCCGUCUCCGgacgccucUCCGGAGg -3'
miRNA:   3'- ggCGCCagGGGCGGAGGCa-------AGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 22930 0.7 0.421528
Target:  5'- cCCGCGGgCCCCGCUUCCccgCCGc-- -3'
miRNA:   3'- -GGCGCCaGGGGCGGAGGcaaGGCcuc -5'
5664 5' -62.6 NC_001806.1 + 50181 0.7 0.446771
Target:  5'- gCUGgGGUCCCUGCUguaCUGgcCCGGGGu -3'
miRNA:   3'- -GGCgCCAGGGGCGGa--GGCaaGGCCUC- -5'
5664 5' -62.6 NC_001806.1 + 49434 0.69 0.472833
Target:  5'- cCCGCGGUCCuCCGCaggcCCGgca-GGGGg -3'
miRNA:   3'- -GGCGCCAGG-GGCGga--GGCaaggCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.