miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 19737 0.8 0.059346
Target:  5'- cUCCGCCcCCGCgUCCCcccuccUCCGCCCCCGc -3'
miRNA:   3'- -GGGUGGuGGCGgAGGG------AGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 19781 0.8 0.059346
Target:  5'- cUCCGCCcCCGCgUCCCcccuccUCCGCCCCCGc -3'
miRNA:   3'- -GGGUGGuGGCGgAGGG------AGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 19825 0.72 0.20451
Target:  5'- cUCCGCCcCCGCgUCCCccccuccUCCGCCCaCCc -3'
miRNA:   3'- -GGGUGGuGGCGgAGGG-------AGGCGGG-GGu -5'
5665 3' -65.8 NC_001806.1 + 20157 0.81 0.051023
Target:  5'- aCCCGCCccCCGCCgCCCgggcCCGCCCCCGg -3'
miRNA:   3'- -GGGUGGu-GGCGGaGGGa---GGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 20290 0.68 0.369842
Target:  5'- aCCCggcgGCC-CCGCC-CCCUuggggcggucCCGCCCgCCGg -3'
miRNA:   3'- -GGG----UGGuGGCGGaGGGA----------GGCGGG-GGU- -5'
5665 3' -65.8 NC_001806.1 + 20750 0.67 0.408839
Target:  5'- cUCCGCUGCU-CCUCCUUCCcgccgGCCCCUg -3'
miRNA:   3'- -GGGUGGUGGcGGAGGGAGG-----CGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 21151 0.67 0.408839
Target:  5'- cCCCACCgacggGCCGCCgCCCaccCCGagCCCAg -3'
miRNA:   3'- -GGGUGG-----UGGCGGaGGGa--GGCggGGGU- -5'
5665 3' -65.8 NC_001806.1 + 21412 0.67 0.408839
Target:  5'- gCCCGaccCCGCgGCCUCg--CCGCCCCgGa -3'
miRNA:   3'- -GGGU---GGUGgCGGAGggaGGCGGGGgU- -5'
5665 3' -65.8 NC_001806.1 + 21565 0.69 0.31967
Target:  5'- cCCCACgGaCCGCCUgUCgCCGCgCCCGc -3'
miRNA:   3'- -GGGUGgU-GGCGGAgGGaGGCGgGGGU- -5'
5665 3' -65.8 NC_001806.1 + 21826 0.68 0.369842
Target:  5'- gCCCggGCCACCcccCCUCuCCgaggCCGCgCCCAa -3'
miRNA:   3'- -GGG--UGGUGGc--GGAG-GGa---GGCGgGGGU- -5'
5665 3' -65.8 NC_001806.1 + 22059 0.73 0.182508
Target:  5'- gCCCGgCGCCGgg-CCC-CCGCCCCCGg -3'
miRNA:   3'- -GGGUgGUGGCggaGGGaGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 22513 0.67 0.416941
Target:  5'- aCCAgCCugCGCCgcgCCUaCgCGCCCCUg -3'
miRNA:   3'- gGGU-GGugGCGGa--GGGaG-GCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 22701 0.75 0.140611
Target:  5'- gUCCGCCGcgcCCGCCUCCC-CCGCggggggcgacgaCCCCGa -3'
miRNA:   3'- -GGGUGGU---GGCGGAGGGaGGCG------------GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 22929 0.68 0.392934
Target:  5'- aCCCgcggGCC-CCGCUUCCCcgCCGCgCCgCAc -3'
miRNA:   3'- -GGG----UGGuGGCGGAGGGa-GGCGgGG-GU- -5'
5665 3' -65.8 NC_001806.1 + 23160 0.69 0.312266
Target:  5'- gCCGCCGCCGCCgcggaccugcuguUUgacaaccagagCCUgCGCCCCCu -3'
miRNA:   3'- gGGUGGUGGCGG-------------AG-----------GGAgGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 23256 0.77 0.102547
Target:  5'- gCCGCCGCCGCCUCCg-CCGCgCCgCGg -3'
miRNA:   3'- gGGUGGUGGCGGAGGgaGGCGgGG-GU- -5'
5665 3' -65.8 NC_001806.1 + 23402 0.73 0.178283
Target:  5'- cCCCGCgCcCgCGCCcCCCUCCacGCCCCCGg -3'
miRNA:   3'- -GGGUG-GuG-GCGGaGGGAGG--CGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 23441 0.72 0.214624
Target:  5'- gCCCGCCcCCGCCcagCCCgCgGCgCCCCGg -3'
miRNA:   3'- -GGGUGGuGGCGGa--GGGaGgCG-GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 23472 0.68 0.400836
Target:  5'- gCCGCCGCgGCgCaggCCCgcCCGCgCCCCGu -3'
miRNA:   3'- gGGUGGUGgCG-Ga--GGGa-GGCG-GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 23588 0.73 0.186821
Target:  5'- gCCCGCgGCCGCCgCCCUggaggccuaCUGCuCCCCGc -3'
miRNA:   3'- -GGGUGgUGGCGGaGGGA---------GGCG-GGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.