miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 1125 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 1240 0.67 0.45887
Target:  5'- cCCCGCC-CCGUCccggCCCguuacagcaccCCGUCCCCc -3'
miRNA:   3'- -GGGUGGuGGCGGa---GGGa----------GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 1330 0.78 0.082938
Target:  5'- uCCCGCCGCgggggcguggccaaGCC-CgCCUCCGCCCCCAg -3'
miRNA:   3'- -GGGUGGUGg-------------CGGaG-GGAGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 1372 0.7 0.287067
Target:  5'- aCCuCCACgGCC-CCCgCCGCCgCCAg -3'
miRNA:   3'- gGGuGGUGgCGGaGGGaGGCGGgGGU- -5'
5665 3' -65.8 NC_001806.1 + 2317 0.67 0.441823
Target:  5'- cCCCGCCGCCgGCCaggUCCUC-GCCCg-- -3'
miRNA:   3'- -GGGUGGUGG-CGGa--GGGAGgCGGGggu -5'
5665 3' -65.8 NC_001806.1 + 3185 0.66 0.493973
Target:  5'- gCCACgGCgGCCUCgCUgCCGCCggCCAc -3'
miRNA:   3'- gGGUGgUGgCGGAGgGA-GGCGGg-GGU- -5'
5665 3' -65.8 NC_001806.1 + 3389 0.69 0.340528
Target:  5'- gCCGCCAggUCGCCgucgaagCCCUCggccagCGCCUCCAg -3'
miRNA:   3'- gGGUGGU--GGCGGa------GGGAG------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 3670 0.68 0.362354
Target:  5'- gCCGgCGCCGgggCUCCCcgCgGCCCCCGu -3'
miRNA:   3'- gGGUgGUGGCg--GAGGGa-GgCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 4326 0.66 0.502942
Target:  5'- gCCgGCCACCGCCgcgcgggCCCggCgGCgCUCGa -3'
miRNA:   3'- -GGgUGGUGGCGGa------GGGa-GgCGgGGGU- -5'
5665 3' -65.8 NC_001806.1 + 4950 0.66 0.467524
Target:  5'- gCCCGCCGCgGgggCCCUCCcGUCCCg- -3'
miRNA:   3'- -GGGUGGUGgCggaGGGAGG-CGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 5026 0.71 0.235076
Target:  5'- cCCCGCC-CU-CCUCCguCUCCGCgCCCCAc -3'
miRNA:   3'- -GGGUGGuGGcGGAGG--GAGGCG-GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 5516 0.71 0.25714
Target:  5'- --gGCCGCCGgC-CCC-CCGCCCCCc -3'
miRNA:   3'- gggUGGUGGCgGaGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 5900 0.73 0.178283
Target:  5'- gCCCAaggGCCGCCcgCCUUgCCGCCCCCc -3'
miRNA:   3'- -GGGUgg-UGGCGGa-GGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 6826 0.73 0.186386
Target:  5'- cCCCugCugCGCuCUCCCgggCugcugcccgaaauCGCCCCCAa -3'
miRNA:   3'- -GGGugGugGCG-GAGGGa--G-------------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 9850 0.68 0.400836
Target:  5'- uUCCACCACCGCgUUCCgguaCUGCgCCgCGg -3'
miRNA:   3'- -GGGUGGUGGCGgAGGGa---GGCGgGG-GU- -5'
5665 3' -65.8 NC_001806.1 + 10985 0.71 0.25147
Target:  5'- cCCCACCACCGCC-CCgcgaUCCauGUCCCgGg -3'
miRNA:   3'- -GGGUGGUGGCGGaGGg---AGG--CGGGGgU- -5'
5665 3' -65.8 NC_001806.1 + 14724 0.66 0.502942
Target:  5'- -aUACCACCGCCUuuauuguucuugCUUUCCGCaugugggcucuCCCCAu -3'
miRNA:   3'- ggGUGGUGGCGGA------------GGGAGGCG-----------GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 16497 0.68 0.385133
Target:  5'- gCCGCCGCgGCUgauggCUCgagCCGCCUCCc -3'
miRNA:   3'- gGGUGGUGgCGGa----GGGa--GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 17150 0.67 0.433435
Target:  5'- gCCuCCGCUGCCggUCgCUCCaaggGCCCCCc -3'
miRNA:   3'- gGGuGGUGGCGG--AGgGAGG----CGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 18221 0.68 0.377436
Target:  5'- cCCCAUguCCGCguggucuguUUCUCUCCGCCCUUc -3'
miRNA:   3'- -GGGUGguGGCG---------GAGGGAGGCGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.