miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 68761 0.66 0.511981
Target:  5'- aCCACCccggcguacaGCCuGCuCUUCC-CCGCCCCg- -3'
miRNA:   3'- gGGUGG----------UGG-CG-GAGGGaGGCGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 136638 0.66 0.511981
Target:  5'- gCCACCccggcgauauCCGCCUCCCgggCGUUCCUg -3'
miRNA:   3'- gGGUGGu---------GGCGGAGGGag-GCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 144315 0.66 0.485965
Target:  5'- cCCCcCCcCCGCCcguguggguauccggCCCcCCGCCCCg- -3'
miRNA:   3'- -GGGuGGuGGCGGa--------------GGGaGGCGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 96893 0.66 0.511981
Target:  5'- uUCgGCCACCGCuaCUCCCaguuuauggggaUCuuugaggaccgCGCCCCCGu -3'
miRNA:   3'- -GGgUGGUGGCG--GAGGG------------AG-----------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 118927 0.66 0.502942
Target:  5'- gCCgGCaCACCcugGCCUCCUUCCGCgUgCGu -3'
miRNA:   3'- -GGgUG-GUGG---CGGAGGGAGGCGgGgGU- -5'
5665 3' -65.8 NC_001806.1 + 125858 0.66 0.485079
Target:  5'- gCCGCCGCggaCGCCguggcgCCC-CgGCCCCUc -3'
miRNA:   3'- gGGUGGUG---GCGGa-----GGGaGgCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 150101 0.66 0.494867
Target:  5'- gCCCACCGcggggcggccCCGUC-CCCggggaccaacccggCGCCCCCAa -3'
miRNA:   3'- -GGGUGGU----------GGCGGaGGGag------------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 73984 0.66 0.467524
Target:  5'- gCCCGCC-CCgGCCggggcggCCCcgcagggggcUCCGCgCCCAc -3'
miRNA:   3'- -GGGUGGuGG-CGGa------GGG----------AGGCGgGGGU- -5'
5665 3' -65.8 NC_001806.1 + 117247 0.66 0.476261
Target:  5'- uCCCGCCAacacCCcCUUCCCcCCcCCCCCu -3'
miRNA:   3'- -GGGUGGU----GGcGGAGGGaGGcGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 89982 0.66 0.467524
Target:  5'- cCCCaACC-CCGgucuccaacCCUCCCcuugaccgucgCCGCCCCCc -3'
miRNA:   3'- -GGG-UGGuGGC---------GGAGGGa----------GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 118117 0.66 0.502942
Target:  5'- gUCGUCGCCgGUCUCCCUggCCugGCCCCCGa -3'
miRNA:   3'- gGGUGGUGG-CGGAGGGA--GG--CGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 143166 0.66 0.511981
Target:  5'- uCCCGCCcCCcCC-CCC-CC-CCCCCGa -3'
miRNA:   3'- -GGGUGGuGGcGGaGGGaGGcGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 4950 0.66 0.467524
Target:  5'- gCCCGCCGCgGgggCCCUCCcGUCCCg- -3'
miRNA:   3'- -GGGUGGUGgCggaGGGAGG-CGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 89311 0.67 0.445204
Target:  5'- gCCCugGCCGCCGaCUUUCCUccgggggacagcgggCCGCCgCCAc -3'
miRNA:   3'- -GGG--UGGUGGC-GGAGGGA---------------GGCGGgGGU- -5'
5665 3' -65.8 NC_001806.1 + 85708 0.67 0.441823
Target:  5'- cUCCGCCGuagCGCCggcaCCCaCCGCCCCgAa -3'
miRNA:   3'- -GGGUGGUg--GCGGa---GGGaGGCGGGGgU- -5'
5665 3' -65.8 NC_001806.1 + 2317 0.67 0.441823
Target:  5'- cCCCGCCGCCgGCCaggUCCUC-GCCCg-- -3'
miRNA:   3'- -GGGUGGUGG-CGGa--GGGAGgCGGGggu -5'
5665 3' -65.8 NC_001806.1 + 115396 0.67 0.45887
Target:  5'- gCCUACCACCucaacgggGCCUCgCCggugCUcaGCCCCUg -3'
miRNA:   3'- -GGGUGGUGG--------CGGAG-GGa---GG--CGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 133629 0.67 0.45887
Target:  5'- gCCCcCCACUGCCUUCCgcggCgGCgCCUu -3'
miRNA:   3'- -GGGuGGUGGCGGAGGGa---GgCGgGGGu -5'
5665 3' -65.8 NC_001806.1 + 88213 0.67 0.441823
Target:  5'- cCCgGCCACCggaaagGCCagcucgUCCUCCcCCCCCGc -3'
miRNA:   3'- -GGgUGGUGG------CGGa-----GGGAGGcGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 107399 0.67 0.44945
Target:  5'- gCCCGCCGgaGCCUUcugauagCCUCgGCCCUg- -3'
miRNA:   3'- -GGGUGGUggCGGAG-------GGAGgCGGGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.