miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 23256 0.77 0.102547
Target:  5'- gCCGCCGCCGCCUCCg-CCGCgCCgCGg -3'
miRNA:   3'- gGGUGGUGGCGGAGGgaGGCGgGG-GU- -5'
5665 3' -65.8 NC_001806.1 + 148290 0.76 0.110362
Target:  5'- gCCCGcCCGCCuauuCCUCCCUCCcCCCCCc -3'
miRNA:   3'- -GGGU-GGUGGc---GGAGGGAGGcGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 47186 0.76 0.113089
Target:  5'- uUCGCCACCGCC-CCC-CCGCCCggCCGg -3'
miRNA:   3'- gGGUGGUGGCGGaGGGaGGCGGG--GGU- -5'
5665 3' -65.8 NC_001806.1 + 79613 0.76 0.115879
Target:  5'- cCCCgauGCCACCGCCcCCCgcccccCCGCCUCCu -3'
miRNA:   3'- -GGG---UGGUGGCGGaGGGa-----GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 78615 0.76 0.115879
Target:  5'- gCCgGCCGCCGCCaCCCaCCGCaCCCCc -3'
miRNA:   3'- -GGgUGGUGGCGGaGGGaGGCG-GGGGu -5'
5665 3' -65.8 NC_001806.1 + 1125 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 1091 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 1057 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 1023 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 939 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 905 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 871 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 143657 0.76 0.118733
Target:  5'- gCCCcCCGCCGCUaaaCCCcaucCCGCCCCCGg -3'
miRNA:   3'- -GGGuGGUGGCGGa--GGGa---GGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 72750 0.75 0.124639
Target:  5'- cCCCuCCGCCGaCCcaCCCUCCGCCgaCCCAc -3'
miRNA:   3'- -GGGuGGUGGC-GGa-GGGAGGCGG--GGGU- -5'
5665 3' -65.8 NC_001806.1 + 79880 0.75 0.130815
Target:  5'- gCCGCCGgccaggcuucucCCGCuCUCCCuaucgaucccguUCCGCCCCCGg -3'
miRNA:   3'- gGGUGGU------------GGCG-GAGGG------------AGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 106163 0.75 0.130815
Target:  5'- gCCgACCGCCcaGCCUCCCcccucggUCGCCCCCc -3'
miRNA:   3'- -GGgUGGUGG--CGGAGGGa------GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 26753 0.75 0.137273
Target:  5'- uUCCGCCuuCCGCCgcgccucgCCCUCCGCCUgCGc -3'
miRNA:   3'- -GGGUGGu-GGCGGa-------GGGAGGCGGGgGU- -5'
5665 3' -65.8 NC_001806.1 + 22701 0.75 0.140611
Target:  5'- gUCCGCCGcgcCCGCCUCCC-CCGCggggggcgacgaCCCCGa -3'
miRNA:   3'- -GGGUGGU---GGCGGAGGGaGGCG------------GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 34828 0.75 0.140611
Target:  5'- aUCCGCgGCC-CCUCCCggcagccaCGCCCCCAg -3'
miRNA:   3'- -GGGUGgUGGcGGAGGGag------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 150674 0.75 0.140611
Target:  5'- cCCCGCCgcgcuggcgGCCGCCgauggCCagucCCGCCCCCGa -3'
miRNA:   3'- -GGGUGG---------UGGCGGa----GGga--GGCGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.