Results 21 - 40 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5665 | 3' | -65.8 | NC_001806.1 | + | 125858 | 0.66 | 0.485079 |
Target: 5'- gCCGCCGCggaCGCCguggcgCCC-CgGCCCCUc -3' miRNA: 3'- gGGUGGUG---GCGGa-----GGGaGgCGGGGGu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 112869 | 0.66 | 0.485079 |
Target: 5'- gCCgCGCaCGCCGgggaCCUagUCC-CCGCCCCCGg -3' miRNA: 3'- -GG-GUG-GUGGC----GGA--GGGaGGCGGGGGU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 48256 | 0.66 | 0.484194 |
Target: 5'- gUCUACCAUCGagggccugcucgaUCUCCCggacgacgaCGCCCCCGa -3' miRNA: 3'- -GGGUGGUGGC-------------GGAGGGag-------GCGGGGGU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 117247 | 0.66 | 0.476261 |
Target: 5'- uCCCGCCAacacCCcCUUCCCcCCcCCCCCu -3' miRNA: 3'- -GGGUGGU----GGcGGAGGGaGGcGGGGGu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 28921 | 0.66 | 0.476261 |
Target: 5'- aCCCGCC-CC-CCUuuuuucCCCUagcCCGCCCCgGa -3' miRNA: 3'- -GGGUGGuGGcGGA------GGGA---GGCGGGGgU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 57964 | 0.66 | 0.476261 |
Target: 5'- --gGCCcCCGCCUCUC-CCGCCCg-- -3' miRNA: 3'- gggUGGuGGCGGAGGGaGGCGGGggu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 60464 | 0.66 | 0.467524 |
Target: 5'- cUCCACggaaACCagGCC-CCCUCUGCCgCCGg -3' miRNA: 3'- -GGGUGg---UGG--CGGaGGGAGGCGGgGGU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 51811 | 0.66 | 0.467524 |
Target: 5'- gCCGCCACCgugGCCggCCUgcgcgaCGCCCuCCAu -3' miRNA: 3'- gGGUGGUGG---CGGa-GGGag----GCGGG-GGU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 98138 | 0.66 | 0.467524 |
Target: 5'- gCUCGCgGCCcgggGCCUgCUacagCCGCCCCCu -3' miRNA: 3'- -GGGUGgUGG----CGGAgGGa---GGCGGGGGu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 73984 | 0.66 | 0.467524 |
Target: 5'- gCCCGCC-CCgGCCggggcggCCCcgcagggggcUCCGCgCCCAc -3' miRNA: 3'- -GGGUGGuGG-CGGa------GGG----------AGGCGgGGGU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 4950 | 0.66 | 0.467524 |
Target: 5'- gCCCGCCGCgGgggCCCUCCcGUCCCg- -3' miRNA: 3'- -GGGUGGUGgCggaGGGAGG-CGGGGgu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 89982 | 0.66 | 0.467524 |
Target: 5'- cCCCaACC-CCGgucuccaacCCUCCCcuugaccgucgCCGCCCCCc -3' miRNA: 3'- -GGG-UGGuGGC---------GGAGGGa----------GGCGGGGGu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 148827 | 0.66 | 0.465787 |
Target: 5'- cCCCGagACCGCCcccccauccacgCCCUgCGgCCCCAg -3' miRNA: 3'- -GGGUggUGGCGGa-----------GGGAgGCgGGGGU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 1240 | 0.67 | 0.45887 |
Target: 5'- cCCCGCC-CCGUCccggCCCguuacagcaccCCGUCCCCc -3' miRNA: 3'- -GGGUGGuGGCGGa---GGGa----------GGCGGGGGu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 115396 | 0.67 | 0.45887 |
Target: 5'- gCCUACCACCucaacgggGCCUCgCCggugCUcaGCCCCUg -3' miRNA: 3'- -GGGUGGUGG--------CGGAG-GGa---GG--CGGGGGu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 133629 | 0.67 | 0.45887 |
Target: 5'- gCCCcCCACUGCCUUCCgcggCgGCgCCUu -3' miRNA: 3'- -GGGuGGUGGCGGAGGGa---GgCGgGGGu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 107399 | 0.67 | 0.44945 |
Target: 5'- gCCCGCCGgaGCCUUcugauagCCUCgGCCCUg- -3' miRNA: 3'- -GGGUGGUggCGGAG-------GGAGgCGGGGgu -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 89311 | 0.67 | 0.445204 |
Target: 5'- gCCCugGCCGCCGaCUUUCCUccgggggacagcgggCCGCCgCCAc -3' miRNA: 3'- -GGG--UGGUGGC-GGAGGGA---------------GGCGGgGGU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 82431 | 0.67 | 0.441823 |
Target: 5'- gCCCGCCuCC-CCgUCC-CCGCCCCgCAa -3' miRNA: 3'- -GGGUGGuGGcGGaGGGaGGCGGGG-GU- -5' |
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5665 | 3' | -65.8 | NC_001806.1 | + | 26348 | 0.67 | 0.441823 |
Target: 5'- cUCUACCACC-CCggcacgCUCUCUGUCUCCAu -3' miRNA: 3'- -GGGUGGUGGcGGa-----GGGAGGCGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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