miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 26348 0.67 0.441823
Target:  5'- cUCUACCACC-CCggcacgCUCUCUGUCUCCAu -3'
miRNA:   3'- -GGGUGGUGGcGGa-----GGGAGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 85708 0.67 0.441823
Target:  5'- cUCCGCCGuagCGCCggcaCCCaCCGCCCCgAa -3'
miRNA:   3'- -GGGUGGUg--GCGGa---GGGaGGCGGGGgU- -5'
5665 3' -65.8 NC_001806.1 + 88213 0.67 0.441823
Target:  5'- cCCgGCCACCggaaagGCCagcucgUCCUCCcCCCCCGc -3'
miRNA:   3'- -GGgUGGUGG------CGGa-----GGGAGGcGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 2317 0.67 0.441823
Target:  5'- cCCCGCCGCCgGCCaggUCCUC-GCCCg-- -3'
miRNA:   3'- -GGGUGGUGG-CGGa--GGGAGgCGGGggu -5'
5665 3' -65.8 NC_001806.1 + 83224 0.67 0.433435
Target:  5'- gCCGCCgacguggucACCGCC-CCCUCaaggGCCCgCGg -3'
miRNA:   3'- gGGUGG---------UGGCGGaGGGAGg---CGGGgGU- -5'
5665 3' -65.8 NC_001806.1 + 17150 0.67 0.433435
Target:  5'- gCCuCCGCUGCCggUCgCUCCaaggGCCCCCc -3'
miRNA:   3'- gGGuGGUGGCGG--AGgGAGG----CGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 69821 0.67 0.433435
Target:  5'- cCCCACCACCccggccacGCCgCUgUCCGCgcuucuCCCCu -3'
miRNA:   3'- -GGGUGGUGG--------CGGaGGgAGGCG------GGGGu -5'
5665 3' -65.8 NC_001806.1 + 135592 0.67 0.433435
Target:  5'- gCCGCgCGCUGCUggCgCUCCaggGCCCCCGc -3'
miRNA:   3'- gGGUG-GUGGCGGa-GgGAGG---CGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 65674 0.67 0.416941
Target:  5'- -gCGCUgggGCCGCCggCCUCCuGuCCCCCAa -3'
miRNA:   3'- ggGUGG---UGGCGGagGGAGG-C-GGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 22513 0.67 0.416941
Target:  5'- aCCAgCCugCGCCgcgCCUaCgCGCCCCUg -3'
miRNA:   3'- gGGU-GGugGCGGa--GGGaG-GCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 55259 0.67 0.416941
Target:  5'- -gCGCCcggGCCgGCC-CCCUCCGCCCa-- -3'
miRNA:   3'- ggGUGG---UGG-CGGaGGGAGGCGGGggu -5'
5665 3' -65.8 NC_001806.1 + 72923 0.67 0.416941
Target:  5'- uCCCAagCGCCGCCgaCCCaccuggacUCCGCCuUCCAg -3'
miRNA:   3'- -GGGUg-GUGGCGGa-GGG--------AGGCGG-GGGU- -5'
5665 3' -65.8 NC_001806.1 + 73067 0.67 0.416127
Target:  5'- cCCCGCCuCCGuuccggagccuguCCUCgCCUCgGCaCCCCc -3'
miRNA:   3'- -GGGUGGuGGC-------------GGAG-GGAGgCG-GGGGu -5'
5665 3' -65.8 NC_001806.1 + 20750 0.67 0.408839
Target:  5'- cUCCGCUGCU-CCUCCUUCCcgccgGCCCCUg -3'
miRNA:   3'- -GGGUGGUGGcGGAGGGAGG-----CGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 23712 0.67 0.408839
Target:  5'- aUCGCCGCgcggugCGCCgggCCCgcccCCGCCgCCCAg -3'
miRNA:   3'- gGGUGGUG------GCGGa--GGGa---GGCGG-GGGU- -5'
5665 3' -65.8 NC_001806.1 + 21412 0.67 0.408839
Target:  5'- gCCCGaccCCGCgGCCUCg--CCGCCCCgGa -3'
miRNA:   3'- -GGGU---GGUGgCGGAGggaGGCGGGGgU- -5'
5665 3' -65.8 NC_001806.1 + 143561 0.67 0.408839
Target:  5'- cCCgGCCACCGCCgCCCacCCaCCCaCCu -3'
miRNA:   3'- -GGgUGGUGGCGGaGGGa-GGcGGG-GGu -5'
5665 3' -65.8 NC_001806.1 + 21151 0.67 0.408839
Target:  5'- cCCCACCgacggGCCGCCgCCCaccCCGagCCCAg -3'
miRNA:   3'- -GGGUGG-----UGGCGGaGGGa--GGCggGGGU- -5'
5665 3' -65.8 NC_001806.1 + 56242 0.68 0.400836
Target:  5'- cCCCGaagcgUCGCCGCCaaCCgggccCCGUCCCCGg -3'
miRNA:   3'- -GGGU-----GGUGGCGGagGGa----GGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 59273 0.68 0.400836
Target:  5'- gCCCGCCG-CGCUagCCUgauuaaauaCGCCCCCAg -3'
miRNA:   3'- -GGGUGGUgGCGGagGGAg--------GCGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.