miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 72791 1.09 0.000469
Target:  5'- uCCCACCACCGCCUCCCUCCGCCCCCAa -3'
miRNA:   3'- -GGGUGGUGGCGGAGGGAGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 26381 0.86 0.020922
Target:  5'- gCCCGCCGCCGCCgccaucgcggCCCccgCCGCCCCCGg -3'
miRNA:   3'- -GGGUGGUGGCGGa---------GGGa--GGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 26662 0.85 0.027726
Target:  5'- gCCCACCGCCGCCgCCCcCCGgCCCCGg -3'
miRNA:   3'- -GGGUGGUGGCGGaGGGaGGCgGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 34144 0.84 0.032314
Target:  5'- cCCCGUCACCcCCUCCCUCCGUCCCCu -3'
miRNA:   3'- -GGGUGGUGGcGGAGGGAGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 990 0.82 0.044964
Target:  5'- uCCCGCCcCCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuGGCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 26514 0.82 0.046117
Target:  5'- cCCCGCCGCCGCCcCCCgCCgguggGCCCCCGc -3'
miRNA:   3'- -GGGUGGUGGCGGaGGGaGG-----CGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 46166 0.82 0.046117
Target:  5'- aCCCACCACCGCCcCCCgg-GCCCCCc -3'
miRNA:   3'- -GGGUGGUGGCGGaGGGaggCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 832 0.82 0.046117
Target:  5'- aCCACCACCGCCccucgccCCCUcCCGCCCCUc -3'
miRNA:   3'- gGGUGGUGGCGGa------GGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 20157 0.81 0.051023
Target:  5'- aCCCGCCccCCGCCgCCCgggcCCGCCCCCGg -3'
miRNA:   3'- -GGGUGGu-GGCGGaGGGa---GGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 19781 0.8 0.059346
Target:  5'- cUCCGCCcCCGCgUCCCcccuccUCCGCCCCCGc -3'
miRNA:   3'- -GGGUGGuGGCGgAGGG------AGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 19737 0.8 0.059346
Target:  5'- cUCCGCCcCCGCgUCCCcccuccUCCGCCCCCGc -3'
miRNA:   3'- -GGGUGGuGGCGgAGGG------AGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 116030 0.79 0.070723
Target:  5'- aCCC-CCACCGCgCUCCUcCCGCCaCCCGa -3'
miRNA:   3'- -GGGuGGUGGCG-GAGGGaGGCGG-GGGU- -5'
5665 3' -65.8 NC_001806.1 + 589 0.78 0.080105
Target:  5'- -aCACCACCGCC-CCCUCCccaGCCCCa- -3'
miRNA:   3'- ggGUGGUGGCGGaGGGAGG---CGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 150920 0.78 0.082119
Target:  5'- gCCCgAUgACCGCCUCggCCUCCGCCaCCCGg -3'
miRNA:   3'- -GGG-UGgUGGCGGAG--GGAGGCGG-GGGU- -5'
5665 3' -65.8 NC_001806.1 + 1330 0.78 0.082938
Target:  5'- uCCCGCCGCgggggcguggccaaGCC-CgCCUCCGCCCCCAg -3'
miRNA:   3'- -GGGUGGUGg-------------CGGaG-GGAGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 52382 0.78 0.085654
Target:  5'- --gACCACCGCCcCCCUguuccccacgaugaCCGCCCCCAg -3'
miRNA:   3'- gggUGGUGGCGGaGGGA--------------GGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 103030 0.77 0.090669
Target:  5'- gCCGCCGCCGUCUCCag-CGCCUCCAg -3'
miRNA:   3'- gGGUGGUGGCGGAGGgagGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 30475 0.77 0.097629
Target:  5'- gCCGCC-CCGCUcCCCUCCGCCgCCu -3'
miRNA:   3'- gGGUGGuGGCGGaGGGAGGCGGgGGu -5'
5665 3' -65.8 NC_001806.1 + 46260 0.77 0.097629
Target:  5'- gCCCAgccagaauCCGCCGCaCUCCCagaCGCCCCCGc -3'
miRNA:   3'- -GGGU--------GGUGGCG-GAGGGag-GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 120809 0.77 0.097629
Target:  5'- cCCCGCCuCUGggguuugcCCUCCCcCCGCCCCCGg -3'
miRNA:   3'- -GGGUGGuGGC--------GGAGGGaGGCGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.