miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 5 0.68 0.377436
Target:  5'- gCCGCCACCGCUUUaaagggCCgcgCgCGaCCCCCGg -3'
miRNA:   3'- gGGUGGUGGCGGAG------GGa--G-GC-GGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 88 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 112 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 136 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 160 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 184 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 208 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 232 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 256 0.69 0.333467
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUn -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 280 0.73 0.174145
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCCGc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 321 0.72 0.21959
Target:  5'- gCCCGCCGCgcgcgcgcaCGCCgCCCggaCCGCCgCCCGc -3'
miRNA:   3'- -GGGUGGUG---------GCGGaGGGa--GGCGG-GGGU- -5'
5665 3' -65.8 NC_001806.1 + 589 0.78 0.080105
Target:  5'- -aCACCACCGCC-CCCUCCccaGCCCCa- -3'
miRNA:   3'- ggGUGGUGGCGGaGGGAGG---CGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 832 0.82 0.046117
Target:  5'- aCCACCACCGCCccucgccCCCUcCCGCCCCUc -3'
miRNA:   3'- gGGUGGUGGCGGa------GGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 871 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 905 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 939 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 990 0.82 0.044964
Target:  5'- uCCCGCCcCCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuGGCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 1023 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 1057 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 1091 0.76 0.115879
Target:  5'- uCCCGCCcCuCGCC-CCCUcCCGCCCCUc -3'
miRNA:   3'- -GGGUGGuG-GCGGaGGGA-GGCGGGGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.