miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 152031 0.72 0.21959
Target:  5'- gCCCGCCGCgcgcgcgcaCGCCgCCCggaCCGCCgCCCGc -3'
miRNA:   3'- -GGGUGGUG---------GCGGaGGGa--GGCGG-GGGU- -5'
5665 3' -65.8 NC_001806.1 + 151990 0.73 0.174145
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCCGc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 151966 0.69 0.333467
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUn -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 151942 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 151918 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 151894 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 151870 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 151846 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 151822 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 151798 0.69 0.326515
Target:  5'- cCCC-CCGCU-CCUCCCcCCGCUCCUc -3'
miRNA:   3'- -GGGuGGUGGcGGAGGGaGGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 151715 0.68 0.377436
Target:  5'- gCCGCCACCGCUUUaaagggCCgcgCgCGaCCCCCGg -3'
miRNA:   3'- gGGUGGUGGCGGAG------GGa--G-GC-GGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 150920 0.78 0.082119
Target:  5'- gCCCgAUgACCGCCUCggCCUCCGCCaCCCGg -3'
miRNA:   3'- -GGG-UGgUGGCGGAG--GGAGGCGG-GGGU- -5'
5665 3' -65.8 NC_001806.1 + 150674 0.75 0.140611
Target:  5'- cCCCGCCgcgcuggcgGCCGCCgauggCCagucCCGCCCCCGa -3'
miRNA:   3'- -GGGUGG---------UGGCGGa----GGga--GGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 150101 0.66 0.494867
Target:  5'- gCCCACCGcggggcggccCCGUC-CCCggggaccaacccggCGCCCCCAa -3'
miRNA:   3'- -GGGUGGU----------GGCGGaGGGag------------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 149108 0.68 0.377436
Target:  5'- cCCCcCC-CCGCCUCaCaaagUCCuGCCCCCc -3'
miRNA:   3'- -GGGuGGuGGCGGAG-Gg---AGG-CGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 148827 0.66 0.465787
Target:  5'- cCCCGagACCGCCcccccauccacgCCCUgCGgCCCCAg -3'
miRNA:   3'- -GGGUggUGGCGGa-----------GGGAgGCgGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 148504 0.72 0.204982
Target:  5'- gCCCGCCcugACgGCCU-CCUCgGCCUCCAu -3'
miRNA:   3'- -GGGUGG---UGgCGGAgGGAGgCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 148290 0.76 0.110362
Target:  5'- gCCCGcCCGCCuauuCCUCCCUCCcCCCCCc -3'
miRNA:   3'- -GGGU-GGUGGc---GGAGGGAGGcGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 147932 0.71 0.25714
Target:  5'- gCCGCC-CCGCCUCCgCUUCaacaaCCCCAa -3'
miRNA:   3'- gGGUGGuGGCGGAGG-GAGGcg---GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 147312 0.68 0.385133
Target:  5'- gCCCACCcugGCCGCgCcCCC-CCGgCCCUg -3'
miRNA:   3'- -GGGUGG---UGGCG-GaGGGaGGCgGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.