miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 3' -65.8 NC_001806.1 + 125858 0.66 0.485079
Target:  5'- gCCGCCGCggaCGCCguggcgCCC-CgGCCCCUc -3'
miRNA:   3'- gGGUGGUG---GCGGa-----GGGaGgCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 14724 0.66 0.502942
Target:  5'- -aUACCACCGCCUuuauuguucuugCUUUCCGCaugugggcucuCCCCAu -3'
miRNA:   3'- ggGUGGUGGCGGA------------GGGAGGCG-----------GGGGU- -5'
5665 3' -65.8 NC_001806.1 + 118927 0.66 0.502942
Target:  5'- gCCgGCaCACCcugGCCUCCUUCCGCgUgCGu -3'
miRNA:   3'- -GGgUG-GUGG---CGGAGGGAGGCGgGgGU- -5'
5665 3' -65.8 NC_001806.1 + 112869 0.66 0.485079
Target:  5'- gCCgCGCaCGCCGgggaCCUagUCC-CCGCCCCCGg -3'
miRNA:   3'- -GG-GUG-GUGGC----GGA--GGGaGGCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 148827 0.66 0.465787
Target:  5'- cCCCGagACCGCCcccccauccacgCCCUgCGgCCCCAg -3'
miRNA:   3'- -GGGUggUGGCGGa-----------GGGAgGCgGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 4950 0.66 0.467524
Target:  5'- gCCCGCCGCgGgggCCCUCCcGUCCCg- -3'
miRNA:   3'- -GGGUGGUGgCggaGGGAGG-CGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 98138 0.66 0.467524
Target:  5'- gCUCGCgGCCcgggGCCUgCUacagCCGCCCCCu -3'
miRNA:   3'- -GGGUGgUGG----CGGAgGGa---GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 48256 0.66 0.484194
Target:  5'- gUCUACCAUCGagggccugcucgaUCUCCCggacgacgaCGCCCCCGa -3'
miRNA:   3'- -GGGUGGUGGC-------------GGAGGGag-------GCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 73984 0.66 0.467524
Target:  5'- gCCCGCC-CCgGCCggggcggCCCcgcagggggcUCCGCgCCCAc -3'
miRNA:   3'- -GGGUGGuGG-CGGa------GGG----------AGGCGgGGGU- -5'
5665 3' -65.8 NC_001806.1 + 3185 0.66 0.493973
Target:  5'- gCCACgGCgGCCUCgCUgCCGCCggCCAc -3'
miRNA:   3'- gGGUGgUGgCGGAGgGA-GGCGGg-GGU- -5'
5665 3' -65.8 NC_001806.1 + 89982 0.66 0.467524
Target:  5'- cCCCaACC-CCGgucuccaacCCUCCCcuugaccgucgCCGCCCCCc -3'
miRNA:   3'- -GGG-UGGuGGC---------GGAGGGa----------GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 28921 0.66 0.476261
Target:  5'- aCCCGCC-CC-CCUuuuuucCCCUagcCCGCCCCgGa -3'
miRNA:   3'- -GGGUGGuGGcGGA------GGGA---GGCGGGGgU- -5'
5665 3' -65.8 NC_001806.1 + 140936 0.66 0.511981
Target:  5'- -aCGgCGCUgugGCCUCCCguUCCggGCCCCCGu -3'
miRNA:   3'- ggGUgGUGG---CGGAGGG--AGG--CGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 51811 0.66 0.467524
Target:  5'- gCCGCCACCgugGCCggCCUgcgcgaCGCCCuCCAu -3'
miRNA:   3'- gGGUGGUGG---CGGa-GGGag----GCGGG-GGU- -5'
5665 3' -65.8 NC_001806.1 + 144315 0.66 0.485965
Target:  5'- cCCCcCCcCCGCCcguguggguauccggCCCcCCGCCCCg- -3'
miRNA:   3'- -GGGuGGuGGCGGa--------------GGGaGGCGGGGgu -5'
5665 3' -65.8 NC_001806.1 + 60464 0.66 0.467524
Target:  5'- cUCCACggaaACCagGCC-CCCUCUGCCgCCGg -3'
miRNA:   3'- -GGGUGg---UGG--CGGaGGGAGGCGGgGGU- -5'
5665 3' -65.8 NC_001806.1 + 117247 0.66 0.476261
Target:  5'- uCCCGCCAacacCCcCUUCCCcCCcCCCCCu -3'
miRNA:   3'- -GGGUGGU----GGcGGAGGGaGGcGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 87117 0.66 0.494867
Target:  5'- uCCUugC-CCGCCUCCaggugcgccacugcgUCgGCCCUCAg -3'
miRNA:   3'- -GGGugGuGGCGGAGGg--------------AGgCGGGGGU- -5'
5665 3' -65.8 NC_001806.1 + 30441 0.66 0.493973
Target:  5'- -gCACgGgC-CCUCCCgcggcgCCGCCCCCu -3'
miRNA:   3'- ggGUGgUgGcGGAGGGa-----GGCGGGGGu -5'
5665 3' -65.8 NC_001806.1 + 57964 0.66 0.476261
Target:  5'- --gGCCcCCGCCUCUC-CCGCCCg-- -3'
miRNA:   3'- gggUGGuGGCGGAGGGaGGCGGGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.