miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 43581 0.68 0.852255
Target:  5'- cCGUGGGGGCGGCUGAcaAGuccGcgGAUGu -3'
miRNA:   3'- -GCGUCUCCGCCGGCU--UCuu-CuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 67987 0.68 0.851467
Target:  5'- uGCGGGGGUccuggagGGCCGcGGggGAUcGAUa -3'
miRNA:   3'- gCGUCUCCG-------CCGGCuUCuuCUA-CUGc -5'
5665 5' -55.2 NC_001806.1 + 93464 0.68 0.844284
Target:  5'- uCGaCGGAcGCGGCCcu-GGAGGUGGCGc -3'
miRNA:   3'- -GC-GUCUcCGCCGGcuuCUUCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 12817 0.68 0.844284
Target:  5'- uGUucGGGGUGGCCGggGGAuGGUaaGGCGu -3'
miRNA:   3'- gCGu-CUCCGCCGGCuuCUU-CUA--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 29794 0.68 0.841041
Target:  5'- aCGCAGAGGCGccGCCGcgccccccGUGACGg -3'
miRNA:   3'- -GCGUCUCCGC--CGGCuucuuc--UACUGC- -5'
5665 5' -55.2 NC_001806.1 + 9208 0.69 0.835292
Target:  5'- gGCgAGGGcGCGGUCGAcguggcgAGggGcgGGCGg -3'
miRNA:   3'- gCG-UCUC-CGCCGGCU-------UCuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 11819 0.69 0.827768
Target:  5'- gGUGGAGGUGGUgGucGAGGggGugGa -3'
miRNA:   3'- gCGUCUCCGCCGgCuuCUUCuaCugC- -5'
5665 5' -55.2 NC_001806.1 + 21210 0.69 0.827768
Target:  5'- gGUGGGGcGCGGagaCGGAGGAGGgcgggGACGa -3'
miRNA:   3'- gCGUCUC-CGCCg--GCUUCUUCUa----CUGC- -5'
5665 5' -55.2 NC_001806.1 + 144615 0.69 0.827768
Target:  5'- aGCcGGGGCGGCC-AAGggGcgucGGCGa -3'
miRNA:   3'- gCGuCUCCGCCGGcUUCuuCua--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 148189 0.69 0.827768
Target:  5'- gCGCGG-GGCGuCCGGcgGGggGcgGGCGg -3'
miRNA:   3'- -GCGUCuCCGCcGGCU--UCuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 147176 0.69 0.827768
Target:  5'- cCGCccgaGGAGGCGGaaGcGGAGGAgGACGc -3'
miRNA:   3'- -GCG----UCUCCGCCggCuUCUUCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 147118 0.69 0.819239
Target:  5'- aGCAGcgcGGgGGCCGAGGGAGGUu--- -3'
miRNA:   3'- gCGUCu--CCgCCGGCUUCUUCUAcugc -5'
5665 5' -55.2 NC_001806.1 + 34774 0.69 0.819239
Target:  5'- gGCGG-GGCGGuUCGggGggGGggggggggGGCGg -3'
miRNA:   3'- gCGUCuCCGCC-GGCuuCuuCUa-------CUGC- -5'
5665 5' -55.2 NC_001806.1 + 140428 0.69 0.819239
Target:  5'- gGCAGugaGGGUGGCaUGggGggGG-GGCGg -3'
miRNA:   3'- gCGUC---UCCGCCG-GCuuCuuCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 25944 0.69 0.810539
Target:  5'- gCGUGGGGGCggGGCCGcGGGAGcgGGgGg -3'
miRNA:   3'- -GCGUCUCCG--CCGGCuUCUUCuaCUgC- -5'
5665 5' -55.2 NC_001806.1 + 2813 0.69 0.801676
Target:  5'- gGCGGGGGCGGgcucgggccCCGGgggcguGGAGGggGGCGc -3'
miRNA:   3'- gCGUCUCCGCC---------GGCU------UCUUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 136987 0.69 0.801676
Target:  5'- uGCGGucauggcGGCGGCCGgcGggGAgcgccagcuaGACGg -3'
miRNA:   3'- gCGUCu------CCGCCGGCuuCuuCUa---------CUGC- -5'
5665 5' -55.2 NC_001806.1 + 93894 0.69 0.801676
Target:  5'- cCGCgGGAGGCcGCCccGAAGAGGggGACc -3'
miRNA:   3'- -GCG-UCUCCGcCGG--CUUCUUCuaCUGc -5'
5665 5' -55.2 NC_001806.1 + 74615 0.69 0.79266
Target:  5'- uCGcCAGAGGCcacgcgcauGGCCGAGGAAGcgcuGCGg -3'
miRNA:   3'- -GC-GUCUCCG---------CCGGCUUCUUCuac-UGC- -5'
5665 5' -55.2 NC_001806.1 + 30408 0.69 0.79266
Target:  5'- gCGCGGcucgGGGgGGCCGGgcguGGAGGGUGggcACGg -3'
miRNA:   3'- -GCGUC----UCCgCCGGCU----UCUUCUAC---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.