miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 58069 0.67 0.895676
Target:  5'- gGCccgGGAGGCcgagcucccGGCUGAAGGAGAccccUGGCu -3'
miRNA:   3'- gCG---UCUCCG---------CCGGCUUCUUCU----ACUGc -5'
5665 5' -55.2 NC_001806.1 + 74036 0.67 0.895676
Target:  5'- gGCcccGAGGCcguucagguucGGCUGGAGGAGGUG-CGg -3'
miRNA:   3'- gCGu--CUCCG-----------CCGGCUUCUUCUACuGC- -5'
5665 5' -55.2 NC_001806.1 + 28993 0.67 0.888991
Target:  5'- aGCAgcgacucuGAGGCGGagaCCGAAGuGGGggGGCGg -3'
miRNA:   3'- gCGU--------CUCCGCC---GGCUUC-UUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 6399 0.67 0.882079
Target:  5'- aGCAccuuGGGUGGgCGGAGGAGGggggGACGc -3'
miRNA:   3'- gCGUc---UCCGCCgGCUUCUUCUa---CUGC- -5'
5665 5' -55.2 NC_001806.1 + 147773 0.67 0.882079
Target:  5'- cCGCGGAcgcgGGgGGcCCGggGcGGggGGCGg -3'
miRNA:   3'- -GCGUCU----CCgCC-GGCuuCuUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 50039 0.67 0.882079
Target:  5'- aCGaCAG-GGCGGCCGAGcuGAGgcGGCa -3'
miRNA:   3'- -GC-GUCuCCGCCGGCUUc-UUCuaCUGc -5'
5665 5' -55.2 NC_001806.1 + 106792 0.67 0.882079
Target:  5'- cCGCGuGGGCGGCuaccCGGAGGAGGgcACGa -3'
miRNA:   3'- -GCGUcUCCGCCG----GCUUCUUCUacUGC- -5'
5665 5' -55.2 NC_001806.1 + 103617 0.67 0.882079
Target:  5'- -uCGGAGGCGGCuCGggGuuuggucuuGGUGGCc -3'
miRNA:   3'- gcGUCUCCGCCG-GCuuCuu-------CUACUGc -5'
5665 5' -55.2 NC_001806.1 + 86013 0.68 0.874944
Target:  5'- -cCGGGGGCgcuuGGCCGggGAGGGcagGGCc -3'
miRNA:   3'- gcGUCUCCG----CCGGCuuCUUCUa--CUGc -5'
5665 5' -55.2 NC_001806.1 + 77260 0.68 0.874944
Target:  5'- gGCGGAauucgacgcGGUGGCCGggGAccuggccccaugGGcgGugGa -3'
miRNA:   3'- gCGUCU---------CCGCCGGCuuCU------------UCuaCugC- -5'
5665 5' -55.2 NC_001806.1 + 1842 0.68 0.874944
Target:  5'- gCGCAGcGGCGGCgCGucGggGuacaGGCGc -3'
miRNA:   3'- -GCGUCuCCGCCG-GCuuCuuCua--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 22574 0.68 0.867592
Target:  5'- cCGCGGGGaGCcccggcGCCGgcGcAGAUGACGa -3'
miRNA:   3'- -GCGUCUC-CGc-----CGGCuuCuUCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 24874 0.68 0.867592
Target:  5'- gGCGGcGGgGGCCGuGGAGGugcugggGGCGg -3'
miRNA:   3'- gCGUCuCCgCCGGCuUCUUCua-----CUGC- -5'
5665 5' -55.2 NC_001806.1 + 64079 0.68 0.860026
Target:  5'- uCGUAGAGGCGGUgGAAaAAGAacuUGAa- -3'
miRNA:   3'- -GCGUCUCCGCCGgCUUcUUCU---ACUgc -5'
5665 5' -55.2 NC_001806.1 + 151429 0.68 0.860026
Target:  5'- gGCGGGGGCccaccGGCgGggGgcGgcGGCGg -3'
miRNA:   3'- gCGUCUCCG-----CCGgCuuCuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 59173 0.68 0.860026
Target:  5'- aCGCGGAGGgGGCguaugccgcugCGAGGGugggguuuuGAUGGCa -3'
miRNA:   3'- -GCGUCUCCgCCG-----------GCUUCUu--------CUACUGc -5'
5665 5' -55.2 NC_001806.1 + 25633 0.68 0.859259
Target:  5'- gGCuGGGGCuggggagggcuggGGCUGggGAGGG-GGCGg -3'
miRNA:   3'- gCGuCUCCG-------------CCGGCuuCUUCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 53602 0.68 0.858489
Target:  5'- uGCGGAGGgGGagggaaggggaGAAGAGGA-GACGa -3'
miRNA:   3'- gCGUCUCCgCCgg---------CUUCUUCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 147821 0.68 0.856943
Target:  5'- cCGCGGGGGgccuguggggagaGGCCGggGggGAgucgcUGAUc -3'
miRNA:   3'- -GCGUCUCCg------------CCGGCuuCuuCU-----ACUGc -5'
5665 5' -55.2 NC_001806.1 + 43581 0.68 0.852255
Target:  5'- cCGUGGGGGCGGCUGAcaAGuccGcgGAUGu -3'
miRNA:   3'- -GCGUCUCCGCCGGCU--UCuu-CuaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.