miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 112426 0.67 0.914336
Target:  5'- aCGCGcGGGCGGCCGGucGAcgGGGUGcuCGu -3'
miRNA:   3'- -GCGUcUCCGCCGGCUu-CU--UCUACu-GC- -5'
5665 5' -55.2 NC_001806.1 + 2509 0.67 0.914336
Target:  5'- aCGCGGccuGGGCGGCgGggGcGGGcccGGCGc -3'
miRNA:   3'- -GCGUC---UCCGCCGgCuuCuUCUa--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 4423 0.67 0.914336
Target:  5'- aGgGGGGGUGGCCcGGGcGggGgcGGCGu -3'
miRNA:   3'- gCgUCUCCGCCGG-CUU-CuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 3094 0.67 0.914336
Target:  5'- gGCGGcGGCGGCCGcGGAGcucGGCa -3'
miRNA:   3'- gCGUCuCCGCCGGCuUCUUcuaCUGc -5'
5665 5' -55.2 NC_001806.1 + 98205 0.67 0.910774
Target:  5'- gGUcgAGGGGCaGCUGggGGAGAacaacgagcugcggcUGACGc -3'
miRNA:   3'- gCG--UCUCCGcCGGCuuCUUCU---------------ACUGC- -5'
5665 5' -55.2 NC_001806.1 + 33825 0.67 0.908352
Target:  5'- uCGCGG-GG-GGCCGGAGGguGGAaGGCa -3'
miRNA:   3'- -GCGUCuCCgCCGGCUUCU--UCUaCUGc -5'
5665 5' -55.2 NC_001806.1 + 4992 0.67 0.908352
Target:  5'- uCGUGGGGGUGGUCGggGuc-GUGGuCGg -3'
miRNA:   3'- -GCGUCUCCGCCGGCuuCuucUACU-GC- -5'
5665 5' -55.2 NC_001806.1 + 65615 0.67 0.908352
Target:  5'- gGCAGuacacguGGUGGCCGugggcGAGAGGGgccccGGCGg -3'
miRNA:   3'- gCGUCu------CCGCCGGC-----UUCUUCUa----CUGC- -5'
5665 5' -55.2 NC_001806.1 + 46903 0.67 0.904647
Target:  5'- gGUAGGGGCGGCcCGugcGGGuugcuuaaaugcguGGUGGCGa -3'
miRNA:   3'- gCGUCUCCGCCG-GCu--UCUu-------------CUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 75636 0.67 0.902131
Target:  5'- cCGCGccgacgaacuuGAGGCcgccaccGCCGAccucagagAGAAGAUGGCGg -3'
miRNA:   3'- -GCGU-----------CUCCGc------CGGCU--------UCUUCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 25348 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 74036 0.67 0.895676
Target:  5'- gGCcccGAGGCcguucagguucGGCUGGAGGAGGUG-CGg -3'
miRNA:   3'- gCGu--CUCCG-----------CCGGCUUCUUCUACuGC- -5'
5665 5' -55.2 NC_001806.1 + 25280 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25246 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25212 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25178 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25144 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25110 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 10691 0.67 0.895676
Target:  5'- uCGCAGAuGG-GGCCGggGggGcguACGc -3'
miRNA:   3'- -GCGUCU-CCgCCGGCuuCuuCuacUGC- -5'
5665 5' -55.2 NC_001806.1 + 25382 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.