miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 6210 0.72 0.655329
Target:  5'- uCGCAGAG--GGCCGucGGAGcgGACGg -3'
miRNA:   3'- -GCGUCUCcgCCGGCuuCUUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 39406 0.72 0.665549
Target:  5'- gGCGG-GGCGGUgGuacAAGAAGGUGACc -3'
miRNA:   3'- gCGUCuCCGCCGgC---UUCUUCUACUGc -5'
5665 5' -55.2 NC_001806.1 + 114649 0.71 0.685897
Target:  5'- cCGCgAGAGcGCGGCCGggG-AGAacgcgcUGACc -3'
miRNA:   3'- -GCG-UCUC-CGCCGGCuuCuUCU------ACUGc -5'
5665 5' -55.2 NC_001806.1 + 15620 0.71 0.706067
Target:  5'- gCGCuGGGGCGaagcgcGCCGucGAAGGUGAgGg -3'
miRNA:   3'- -GCGuCUCCGC------CGGCuuCUUCUACUgC- -5'
5665 5' -55.2 NC_001806.1 + 117363 0.71 0.706067
Target:  5'- uGCGGAGGUccggccugGGCCGcGAGGuAGAUGGCc -3'
miRNA:   3'- gCGUCUCCG--------CCGGC-UUCU-UCUACUGc -5'
5665 5' -55.2 NC_001806.1 + 83258 0.71 0.725986
Target:  5'- gCGgGGGGGCGGgcgaCGGAGggGGUucgGGCGg -3'
miRNA:   3'- -GCgUCUCCGCCg---GCUUCuuCUA---CUGC- -5'
5665 5' -55.2 NC_001806.1 + 13143 0.71 0.735829
Target:  5'- gGgAGAGGCaGGCUGAcgGGggGAUGcgcaGCGg -3'
miRNA:   3'- gCgUCUCCG-CCGGCU--UCuuCUAC----UGC- -5'
5665 5' -55.2 NC_001806.1 + 121342 0.7 0.74558
Target:  5'- uCGCGGAGGagccaguGGUCGgcGAgcuGGAUGGCGc -3'
miRNA:   3'- -GCGUCUCCg------CCGGCuuCU---UCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 134244 0.7 0.752348
Target:  5'- gCGgGGGGGCGGCCccggcagccggaauGAGGAgcucgucgGGGUGGCa -3'
miRNA:   3'- -GCgUCUCCGCCGG--------------CUUCU--------UCUACUGc -5'
5665 5' -55.2 NC_001806.1 + 119559 0.7 0.755233
Target:  5'- gCGCcauGGGGGCGGCUGAcGcAGAUG-CGg -3'
miRNA:   3'- -GCG---UCUCCGCCGGCUuCuUCUACuGC- -5'
5665 5' -55.2 NC_001806.1 + 11777 0.7 0.755233
Target:  5'- aGCGGGgauGGUGGUCGAGGGAGcgggGAUGg -3'
miRNA:   3'- gCGUCU---CCGCCGGCUUCUUCua--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 73129 0.7 0.764776
Target:  5'- uCGCcGAGGCGGgCGAGGAcGAcgGGCc -3'
miRNA:   3'- -GCGuCUCCGCCgGCUUCUuCUa-CUGc -5'
5665 5' -55.2 NC_001806.1 + 147277 0.7 0.774201
Target:  5'- gGCGGAGGCcGCCGAGGAcgucAGggGGg- -3'
miRNA:   3'- gCGUCUCCGcCGGCUUCU----UCuaCUgc -5'
5665 5' -55.2 NC_001806.1 + 147695 0.7 0.774201
Target:  5'- gCGCGGGGGCgGGCCcc-GGAGgcGGCGc -3'
miRNA:   3'- -GCGUCUCCG-CCGGcuuCUUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 74615 0.69 0.79266
Target:  5'- uCGcCAGAGGCcacgcgcauGGCCGAGGAAGcgcuGCGg -3'
miRNA:   3'- -GC-GUCUCCG---------CCGGCUUCUUCuac-UGC- -5'
5665 5' -55.2 NC_001806.1 + 30408 0.69 0.79266
Target:  5'- gCGCGGcucgGGGgGGCCGGgcguGGAGGGUGggcACGg -3'
miRNA:   3'- -GCGUC----UCCgCCGGCU----UCUUCUAC---UGC- -5'
5665 5' -55.2 NC_001806.1 + 2813 0.69 0.801676
Target:  5'- gGCGGGGGCGGgcucgggccCCGGgggcguGGAGGggGGCGc -3'
miRNA:   3'- gCGUCUCCGCC---------GGCU------UCUUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 136987 0.69 0.801676
Target:  5'- uGCGGucauggcGGCGGCCGgcGggGAgcgccagcuaGACGg -3'
miRNA:   3'- gCGUCu------CCGCCGGCuuCuuCUa---------CUGC- -5'
5665 5' -55.2 NC_001806.1 + 93894 0.69 0.801676
Target:  5'- cCGCgGGAGGCcGCCccGAAGAGGggGACc -3'
miRNA:   3'- -GCG-UCUCCGcCGG--CUUCUUCuaCUGc -5'
5665 5' -55.2 NC_001806.1 + 25944 0.69 0.810539
Target:  5'- gCGUGGGGGCggGGCCGcGGGAGcgGGgGg -3'
miRNA:   3'- -GCGUCUCCG--CCGGCuUCUUCuaCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.