miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 22574 0.68 0.867592
Target:  5'- cCGCGGGGaGCcccggcGCCGgcGcAGAUGACGa -3'
miRNA:   3'- -GCGUCUC-CGc-----CGGCuuCuUCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 24874 0.68 0.867592
Target:  5'- gGCGGcGGgGGCCGuGGAGGugcugggGGCGg -3'
miRNA:   3'- gCGUCuCCgCCGGCuUCUUCua-----CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25110 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25144 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25178 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25212 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25246 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25280 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25314 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25348 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25382 0.67 0.895676
Target:  5'- gGCgAGGGGCGGgaGggGgcGAggGGCGg -3'
miRNA:   3'- gCG-UCUCCGCCggCuuCuuCUa-CUGC- -5'
5665 5' -55.2 NC_001806.1 + 25537 0.66 0.92505
Target:  5'- gGCuGGGGCcggggagggcuggGGCCGggGAGGGcuggGGCc -3'
miRNA:   3'- gCGuCUCCG-------------CCGGCuuCUUCUa---CUGc -5'
5665 5' -55.2 NC_001806.1 + 25585 0.66 0.92505
Target:  5'- gGCuGGGGCcggggagggcuggGGCCGggGAGGGcuggGGCc -3'
miRNA:   3'- gCGuCUCCG-------------CCGGCuuCUUCUa---CUGc -5'
5665 5' -55.2 NC_001806.1 + 25633 0.68 0.859259
Target:  5'- gGCuGGGGCuggggagggcuggGGCUGggGAGGG-GGCGg -3'
miRNA:   3'- gCGuCUCCG-------------CCGGCuuCUUCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 25944 0.69 0.810539
Target:  5'- gCGUGGGGGCggGGCCGcGGGAGcgGGgGg -3'
miRNA:   3'- -GCGUCUCCG--CCGGCuUCUUCuaCUgC- -5'
5665 5' -55.2 NC_001806.1 + 28857 0.66 0.935884
Target:  5'- gGCGGGGGgGGgaGAGGggGAacucGugGg -3'
miRNA:   3'- gCGUCUCCgCCggCUUCuuCUa---CugC- -5'
5665 5' -55.2 NC_001806.1 + 28993 0.67 0.888991
Target:  5'- aGCAgcgacucuGAGGCGGagaCCGAAGuGGGggGGCGg -3'
miRNA:   3'- gCGU--------CUCCGCC---GGCUUC-UUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 29439 0.66 0.940673
Target:  5'- cCGCAu-GGaGGCCGAGGAGGccgucagGGCGg -3'
miRNA:   3'- -GCGUcuCCgCCGGCUUCUUCua-----CUGC- -5'
5665 5' -55.2 NC_001806.1 + 29680 0.72 0.655329
Target:  5'- gGCGGgcgaggaaaGGGCgGGCCGggGAGGG-GGCGu -3'
miRNA:   3'- gCGUC---------UCCG-CCGGCuuCUUCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 29794 0.68 0.841041
Target:  5'- aCGCAGAGGCGccGCCGcgccccccGUGACGg -3'
miRNA:   3'- -GCGUCUCCGC--CGGCuucuuc--UACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.