miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 1842 0.68 0.874944
Target:  5'- gCGCAGcGGCGGCgCGucGggGuacaGGCGc -3'
miRNA:   3'- -GCGUCuCCGCCG-GCuuCuuCua--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 2509 0.67 0.914336
Target:  5'- aCGCGGccuGGGCGGCgGggGcGGGcccGGCGc -3'
miRNA:   3'- -GCGUC---UCCGCCGgCuuCuUCUa--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 2813 0.69 0.801676
Target:  5'- gGCGGGGGCGGgcucgggccCCGGgggcguGGAGGggGGCGc -3'
miRNA:   3'- gCGUCUCCGCC---------GGCU------UCUUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 3094 0.67 0.914336
Target:  5'- gGCGGcGGCGGCCGcGGAGcucGGCa -3'
miRNA:   3'- gCGUCuCCGCCGGCuUCUUcuaCUGc -5'
5665 5' -55.2 NC_001806.1 + 3305 0.66 0.920082
Target:  5'- uGCGGcGGCGG-CGggGAAGcgGGg- -3'
miRNA:   3'- gCGUCuCCGCCgGCuuCUUCuaCUgc -5'
5665 5' -55.2 NC_001806.1 + 4423 0.67 0.914336
Target:  5'- aGgGGGGGUGGCCcGGGcGggGgcGGCGu -3'
miRNA:   3'- gCgUCUCCGCCGG-CUU-CuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 4992 0.67 0.908352
Target:  5'- uCGUGGGGGUGGUCGggGuc-GUGGuCGg -3'
miRNA:   3'- -GCGUCUCCGCCGGCuuCuucUACU-GC- -5'
5665 5' -55.2 NC_001806.1 + 6210 0.72 0.655329
Target:  5'- uCGCAGAG--GGCCGucGGAGcgGACGg -3'
miRNA:   3'- -GCGUCUCcgCCGGCuuCUUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 6399 0.67 0.882079
Target:  5'- aGCAccuuGGGUGGgCGGAGGAGGggggGACGc -3'
miRNA:   3'- gCGUc---UCCGCCgGCUUCUUCUa---CUGC- -5'
5665 5' -55.2 NC_001806.1 + 6450 0.76 0.456693
Target:  5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3'
miRNA:   3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 6494 0.76 0.456693
Target:  5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3'
miRNA:   3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 6538 0.76 0.456693
Target:  5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3'
miRNA:   3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 9208 0.69 0.835292
Target:  5'- gGCgAGGGcGCGGUCGAcguggcgAGggGcgGGCGg -3'
miRNA:   3'- gCG-UCUC-CGCCGGCU-------UCuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 10691 0.67 0.895676
Target:  5'- uCGCAGAuGG-GGCCGggGggGcguACGc -3'
miRNA:   3'- -GCGUCU-CCgCCGGCuuCuuCuacUGC- -5'
5665 5' -55.2 NC_001806.1 + 11777 0.7 0.755233
Target:  5'- aGCGGGgauGGUGGUCGAGGGAGcgggGAUGg -3'
miRNA:   3'- gCGUCU---CCGCCGGCUUCUUCua--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 11819 0.69 0.827768
Target:  5'- gGUGGAGGUGGUgGucGAGGggGugGa -3'
miRNA:   3'- gCGUCUCCGCCGgCuuCUUCuaCugC- -5'
5665 5' -55.2 NC_001806.1 + 12817 0.68 0.844284
Target:  5'- uGUucGGGGUGGCCGggGGAuGGUaaGGCGu -3'
miRNA:   3'- gCGu-CUCCGCCGGCuuCUU-CUA--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 13143 0.71 0.735829
Target:  5'- gGgAGAGGCaGGCUGAcgGGggGAUGcgcaGCGg -3'
miRNA:   3'- gCgUCUCCG-CCGGCU--UCuuCUAC----UGC- -5'
5665 5' -55.2 NC_001806.1 + 15620 0.71 0.706067
Target:  5'- gCGCuGGGGCGaagcgcGCCGucGAAGGUGAgGg -3'
miRNA:   3'- -GCGuCUCCGC------CGGCuuCUUCUACUgC- -5'
5665 5' -55.2 NC_001806.1 + 21210 0.69 0.827768
Target:  5'- gGUGGGGcGCGGagaCGGAGGAGGgcgggGACGa -3'
miRNA:   3'- gCGUCUC-CGCCg--GCUUCUUCUa----CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.