Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5665 | 5' | -55.2 | NC_001806.1 | + | 100300 | 0.66 | 0.940673 |
Target: 5'- aCGCGGAauGCGGCUGggGuuGG-GGCGc -3' miRNA: 3'- -GCGUCUc-CGCCGGCuuCuuCUaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 143801 | 0.74 | 0.543411 |
Target: 5'- aCGgAGGGGaCGGagGGAGggGGUGACGg -3' miRNA: 3'- -GCgUCUCC-GCCggCUUCuuCUACUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 151555 | 0.74 | 0.543411 |
Target: 5'- gGcCGGGGGCGGCgGggGccgcGAUGGCGg -3' miRNA: 3'- gC-GUCUCCGCCGgCuuCuu--CUACUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 145678 | 0.74 | 0.543411 |
Target: 5'- aCGCGGGGGUgggaagGGUCGggGGAGGgggGAUGg -3' miRNA: 3'- -GCGUCUCCG------CCGGCuuCUUCUa--CUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 150994 | 0.74 | 0.543411 |
Target: 5'- cCGCGGcgcgccaggcGGGCGGCCGAggcccAGAccaccAGGUGGCGc -3' miRNA: 3'- -GCGUC----------UCCGCCGGCU-----UCU-----UCUACUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 71903 | 0.73 | 0.618445 |
Target: 5'- cCGCGGAGGCcaucgagggauguuuGGUCGAGGggGGcgagugGACGc -3' miRNA: 3'- -GCGUCUCCG---------------CCGGCUUCuuCUa-----CUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 43297 | 0.73 | 0.624593 |
Target: 5'- gGCGGAGccGCGGCUGcAGGAGGcccUGGCGg -3' miRNA: 3'- gCGUCUC--CGCCGGCuUCUUCU---ACUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 151276 | 0.73 | 0.624593 |
Target: 5'- gGCGGuGGgGGCCGggGccGGggGGCGg -3' miRNA: 3'- gCGUCuCCgCCGGCuuCu-UCuaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 6210 | 0.72 | 0.655329 |
Target: 5'- uCGCAGAG--GGCCGucGGAGcgGACGg -3' miRNA: 3'- -GCGUCUCcgCCGGCuuCUUCuaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 89598 | 0.74 | 0.533468 |
Target: 5'- cCGCc--GGCGGCCGAcAGGAGAgUGACGu -3' miRNA: 3'- -GCGucuCCGCCGGCU-UCUUCU-ACUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 49239 | 0.74 | 0.52359 |
Target: 5'- aGCuAGAGGCu-CUGGAGGAGAUGGCGg -3' miRNA: 3'- gCG-UCUCCGccGGCUUCUUCUACUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 30506 | 0.75 | 0.484837 |
Target: 5'- aGCAgGAGGCGGCggugcgucCGAGGAAGA-GGCGc -3' miRNA: 3'- gCGU-CUCCGCCG--------GCUUCUUCUaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 147234 | 0.79 | 0.308888 |
Target: 5'- cCGCGGGGGUcggGGCCGAGGAGGAagaGGCa -3' miRNA: 3'- -GCGUCUCCG---CCGGCUUCUUCUa--CUGc -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 147470 | 0.78 | 0.330795 |
Target: 5'- uCGaCAGAGGCGG-CGGAGggGAgcggGGCGg -3' miRNA: 3'- -GC-GUCUCCGCCgGCUUCuuCUa---CUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 30033 | 0.78 | 0.338348 |
Target: 5'- gGCGG-GGCGGCCGAGGGGccgGACGg -3' miRNA: 3'- gCGUCuCCGCCGGCUUCUUcuaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 113270 | 0.77 | 0.403187 |
Target: 5'- uGUGGGGGUGGCCGAcguggagcugccGGggGggGACGu -3' miRNA: 3'- gCGUCUCCGCCGGCU------------UCuuCuaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 6450 | 0.76 | 0.456693 |
Target: 5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3' miRNA: 3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 6494 | 0.76 | 0.456693 |
Target: 5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3' miRNA: 3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 6538 | 0.76 | 0.456693 |
Target: 5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3' miRNA: 3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5' |
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5665 | 5' | -55.2 | NC_001806.1 | + | 76905 | 0.75 | 0.475361 |
Target: 5'- uGCGGAGGUcucucgaggaGGCCGAGGcGGAguggGACGa -3' miRNA: 3'- gCGUCUCCG----------CCGGCUUCuUCUa---CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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