miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 72827 1.1 0.003233
Target:  5'- cCGCAGAGGCGGCCGAAGAAGAUGACGa -3'
miRNA:   3'- -GCGUCUCCGCCGGCUUCUUCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 147234 0.79 0.308888
Target:  5'- cCGCGGGGGUcggGGCCGAGGAGGAagaGGCa -3'
miRNA:   3'- -GCGUCUCCG---CCGGCUUCUUCUa--CUGc -5'
5665 5' -55.2 NC_001806.1 + 147470 0.78 0.330795
Target:  5'- uCGaCAGAGGCGG-CGGAGggGAgcggGGCGg -3'
miRNA:   3'- -GC-GUCUCCGCCgGCUUCuuCUa---CUGC- -5'
5665 5' -55.2 NC_001806.1 + 30033 0.78 0.338348
Target:  5'- gGCGG-GGCGGCCGAGGGGccgGACGg -3'
miRNA:   3'- gCGUCuCCGCCGGCUUCUUcuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 113270 0.77 0.403187
Target:  5'- uGUGGGGGUGGCCGAcguggagcugccGGggGggGACGu -3'
miRNA:   3'- gCGUCUCCGCCGGCU------------UCuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 6538 0.76 0.456693
Target:  5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3'
miRNA:   3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 6494 0.76 0.456693
Target:  5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3'
miRNA:   3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 6450 0.76 0.456693
Target:  5'- aCGCGGGGGCGGa-GGAGggGG-GACGc -3'
miRNA:   3'- -GCGUCUCCGCCggCUUCuuCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 76905 0.75 0.475361
Target:  5'- uGCGGAGGUcucucgaggaGGCCGAGGcGGAguggGACGa -3'
miRNA:   3'- gCGUCUCCG----------CCGGCUUCuUCUa---CUGC- -5'
5665 5' -55.2 NC_001806.1 + 30506 0.75 0.484837
Target:  5'- aGCAgGAGGCGGCggugcgucCGAGGAAGA-GGCGc -3'
miRNA:   3'- gCGU-CUCCGCCG--------GCUUCUUCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 49239 0.74 0.52359
Target:  5'- aGCuAGAGGCu-CUGGAGGAGAUGGCGg -3'
miRNA:   3'- gCG-UCUCCGccGGCUUCUUCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 89598 0.74 0.533468
Target:  5'- cCGCc--GGCGGCCGAcAGGAGAgUGACGu -3'
miRNA:   3'- -GCGucuCCGCCGGCU-UCUUCU-ACUGC- -5'
5665 5' -55.2 NC_001806.1 + 143801 0.74 0.543411
Target:  5'- aCGgAGGGGaCGGagGGAGggGGUGACGg -3'
miRNA:   3'- -GCgUCUCC-GCCggCUUCuuCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 151555 0.74 0.543411
Target:  5'- gGcCGGGGGCGGCgGggGccgcGAUGGCGg -3'
miRNA:   3'- gC-GUCUCCGCCGgCuuCuu--CUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 145678 0.74 0.543411
Target:  5'- aCGCGGGGGUgggaagGGUCGggGGAGGgggGAUGg -3'
miRNA:   3'- -GCGUCUCCG------CCGGCuuCUUCUa--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 150994 0.74 0.543411
Target:  5'- cCGCGGcgcgccaggcGGGCGGCCGAggcccAGAccaccAGGUGGCGc -3'
miRNA:   3'- -GCGUC----------UCCGCCGGCU-----UCU-----UCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 71903 0.73 0.618445
Target:  5'- cCGCGGAGGCcaucgagggauguuuGGUCGAGGggGGcgagugGACGc -3'
miRNA:   3'- -GCGUCUCCG---------------CCGGCUUCuuCUa-----CUGC- -5'
5665 5' -55.2 NC_001806.1 + 43297 0.73 0.624593
Target:  5'- gGCGGAGccGCGGCUGcAGGAGGcccUGGCGg -3'
miRNA:   3'- gCGUCUC--CGCCGGCuUCUUCU---ACUGC- -5'
5665 5' -55.2 NC_001806.1 + 151276 0.73 0.624593
Target:  5'- gGCGGuGGgGGCCGggGccGGggGGCGg -3'
miRNA:   3'- gCGUCuCCgCCGGCuuCu-UCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 29680 0.72 0.655329
Target:  5'- gGCGGgcgaggaaaGGGCgGGCCGggGAGGG-GGCGu -3'
miRNA:   3'- gCGUC---------UCCG-CCGGCuuCUUCUaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.