miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5665 5' -55.2 NC_001806.1 + 151601 0.66 0.935884
Target:  5'- aGaCAGAGaGCGuGCCGggGugguAGAguuUGACa -3'
miRNA:   3'- gC-GUCUC-CGC-CGGCuuCu---UCU---ACUGc -5'
5665 5' -55.2 NC_001806.1 + 151555 0.74 0.543411
Target:  5'- gGcCGGGGGCGGCgGggGccgcGAUGGCGg -3'
miRNA:   3'- gC-GUCUCCGCCGgCuuCuu--CUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 151429 0.68 0.860026
Target:  5'- gGCGGGGGCccaccGGCgGggGgcGgcGGCGg -3'
miRNA:   3'- gCGUCUCCG-----CCGgCuuCuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 151276 0.73 0.624593
Target:  5'- gGCGGuGGgGGCCGggGccGGggGGCGg -3'
miRNA:   3'- gCGUCuCCgCCGGCuuCu-UCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 150994 0.74 0.543411
Target:  5'- cCGCGGcgcgccaggcGGGCGGCCGAggcccAGAccaccAGGUGGCGc -3'
miRNA:   3'- -GCGUC----------UCCGCCGGCU-----UCU-----UCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 148189 0.69 0.827768
Target:  5'- gCGCGG-GGCGuCCGGcgGGggGcgGGCGg -3'
miRNA:   3'- -GCGUCuCCGCcGGCU--UCuuCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 147821 0.68 0.856943
Target:  5'- cCGCGGGGGgccuguggggagaGGCCGggGggGAgucgcUGAUc -3'
miRNA:   3'- -GCGUCUCCg------------CCGGCuuCuuCU-----ACUGc -5'
5665 5' -55.2 NC_001806.1 + 147773 0.67 0.882079
Target:  5'- cCGCGGAcgcgGGgGGcCCGggGcGGggGGCGg -3'
miRNA:   3'- -GCGUCU----CCgCC-GGCuuCuUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 147695 0.7 0.774201
Target:  5'- gCGCGGGGGCgGGCCcc-GGAGgcGGCGc -3'
miRNA:   3'- -GCGUCUCCG-CCGGcuuCUUCuaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 147470 0.78 0.330795
Target:  5'- uCGaCAGAGGCGG-CGGAGggGAgcggGGCGg -3'
miRNA:   3'- -GC-GUCUCCGCCgGCUUCuuCUa---CUGC- -5'
5665 5' -55.2 NC_001806.1 + 147277 0.7 0.774201
Target:  5'- gGCGGAGGCcGCCGAGGAcgucAGggGGg- -3'
miRNA:   3'- gCGUCUCCGcCGGCUUCU----UCuaCUgc -5'
5665 5' -55.2 NC_001806.1 + 147234 0.79 0.308888
Target:  5'- cCGCGGGGGUcggGGCCGAGGAGGAagaGGCa -3'
miRNA:   3'- -GCGUCUCCG---CCGGCUUCUUCUa--CUGc -5'
5665 5' -55.2 NC_001806.1 + 147205 0.66 0.920082
Target:  5'- nGCGGccccGGCGGCgGAAGAGGcgGcCc -3'
miRNA:   3'- gCGUCu---CCGCCGgCUUCUUCuaCuGc -5'
5665 5' -55.2 NC_001806.1 + 147176 0.69 0.827768
Target:  5'- cCGCccgaGGAGGCGGaaGcGGAGGAgGACGc -3'
miRNA:   3'- -GCG----UCUCCGCCggCuUCUUCUaCUGC- -5'
5665 5' -55.2 NC_001806.1 + 147118 0.69 0.819239
Target:  5'- aGCAGcgcGGgGGCCGAGGGAGGUu--- -3'
miRNA:   3'- gCGUCu--CCgCCGGCUUCUUCUAcugc -5'
5665 5' -55.2 NC_001806.1 + 147045 0.66 0.930341
Target:  5'- cCGCGGGGaCGGCCccGGAAGucuccgcGUGGCGc -3'
miRNA:   3'- -GCGUCUCcGCCGGcuUCUUC-------UACUGC- -5'
5665 5' -55.2 NC_001806.1 + 145678 0.74 0.543411
Target:  5'- aCGCGGGGGUgggaagGGUCGggGGAGGgggGAUGg -3'
miRNA:   3'- -GCGUCUCCG------CCGGCuuCUUCUa--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 144615 0.69 0.827768
Target:  5'- aGCcGGGGCGGCC-AAGggGcgucGGCGa -3'
miRNA:   3'- gCGuCUCCGCCGGcUUCuuCua--CUGC- -5'
5665 5' -55.2 NC_001806.1 + 143801 0.74 0.543411
Target:  5'- aCGgAGGGGaCGGagGGAGggGGUGACGg -3'
miRNA:   3'- -GCgUCUCC-GCCggCUUCuuCUACUGC- -5'
5665 5' -55.2 NC_001806.1 + 142163 0.66 0.920082
Target:  5'- uCGCGGGGuGgGGuCCGAcguGgcGAUGAUGg -3'
miRNA:   3'- -GCGUCUC-CgCC-GGCUu--CuuCUACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.