miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5675 3' -58.2 NC_001806.1 + 147356 0.66 0.805265
Target:  5'- uGCGucGCCGCCCucuugGCCCCugcCGGCgCGAGg -3'
miRNA:   3'- -CGCcuUGGUGGG-----UGGGGu--GUCG-GUUU- -5'
5675 3' -58.2 NC_001806.1 + 150954 0.66 0.795463
Target:  5'- cCGGAACCgagcccggucgGCCCGCucgcgggCCCACgAGCCGc- -3'
miRNA:   3'- cGCCUUGG-----------UGGGUG-------GGGUG-UCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 80031 0.66 0.77812
Target:  5'- aGCGGcGCCuuACgCGCCCCGCuGUCGc- -3'
miRNA:   3'- -CGCCuUGG--UGgGUGGGGUGuCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 20473 0.66 0.814014
Target:  5'- uCGGGGCCcgggcCCCGCCCC-CuGCCc-- -3'
miRNA:   3'- cGCCUUGGu----GGGUGGGGuGuCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 27152 0.66 0.77812
Target:  5'- cGCGGAGCU-CCCgggaGCUCCGCA-CCAAGc -3'
miRNA:   3'- -CGCCUUGGuGGG----UGGGGUGUcGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 57602 0.66 0.796361
Target:  5'- gGCGGccGCCAaggcCCCGCCCCGuCAGgggaauCCAAAa -3'
miRNA:   3'- -CGCCu-UGGU----GGGUGGGGU-GUC------GGUUU- -5'
5675 3' -58.2 NC_001806.1 + 2219 0.66 0.805265
Target:  5'- gGCGG--CCGuguCCgGCCCgCACAGCCGGu -3'
miRNA:   3'- -CGCCuuGGU---GGgUGGG-GUGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 121436 0.66 0.77812
Target:  5'- -gGGGGCCuggugGCaCCuCCCCAgCGGCCAGAu -3'
miRNA:   3'- cgCCUUGG-----UG-GGuGGGGU-GUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 50682 0.66 0.77812
Target:  5'- cGCGGcGGCCACgCGCgCCAUucuGGCCGc- -3'
miRNA:   3'- -CGCC-UUGGUGgGUGgGGUG---UCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 76352 0.66 0.78731
Target:  5'- gGCaGGggUCACCCugCCCu--GCCcGAg -3'
miRNA:   3'- -CG-CCuuGGUGGGugGGGuguCGGuUU- -5'
5675 3' -58.2 NC_001806.1 + 52772 0.66 0.796361
Target:  5'- cGCcGAGCCcCCCGCugcggCCaCACAGCCGGc -3'
miRNA:   3'- -CGcCUUGGuGGGUG-----GG-GUGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 5677 0.66 0.77812
Target:  5'- gGCGGGuggguCCGcgcCCCGCCCCGCAuGgCAu- -3'
miRNA:   3'- -CGCCUu----GGU---GGGUGGGGUGU-CgGUuu -5'
5675 3' -58.2 NC_001806.1 + 124771 0.66 0.796361
Target:  5'- aGCGGuuGACCugU-ACgCCCugGGCCAGAc -3'
miRNA:   3'- -CGCC--UUGGugGgUG-GGGugUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 114194 0.66 0.796361
Target:  5'- aCGGAccCCGCgCACCCCcugcaccCGGCCAAu -3'
miRNA:   3'- cGCCUu-GGUGgGUGGGGu------GUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 91889 0.66 0.814014
Target:  5'- cGUGG-ACCAggCGguCCCCACGGCCAu- -3'
miRNA:   3'- -CGCCuUGGUggGU--GGGGUGUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 144999 0.66 0.78731
Target:  5'- -aGGGGCCccgGCCCgggGCCCCACAacgGCCc-- -3'
miRNA:   3'- cgCCUUGG---UGGG---UGGGGUGU---CGGuuu -5'
5675 3' -58.2 NC_001806.1 + 134839 0.66 0.77812
Target:  5'- gGCGGucgccGACCugGCgCACCUCGCAGgCCAGg -3'
miRNA:   3'- -CGCC-----UUGG--UGgGUGGGGUGUC-GGUUu -5'
5675 3' -58.2 NC_001806.1 + 23984 0.66 0.77812
Target:  5'- gGCGGGcuguCCugCCugCUgGCGGCCc-- -3'
miRNA:   3'- -CGCCUu---GGugGGugGGgUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 66616 0.67 0.720574
Target:  5'- cCGGAGgCGCCCaaacagccGCUCCAgGGCCGGc -3'
miRNA:   3'- cGCCUUgGUGGG--------UGGGGUgUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 2925 0.67 0.720574
Target:  5'- cGCGG-GCCG-CCGCCUCcggGCGGCCGGg -3'
miRNA:   3'- -CGCCuUGGUgGGUGGGG---UGUCGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.