miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5675 3' -58.2 NC_001806.1 + 23430 0.73 0.39167
Target:  5'- cCGGGGCCcgaGCCCGCCCCcgccCAGCCc-- -3'
miRNA:   3'- cGCCUUGG---UGGGUGGGGu---GUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 150107 0.73 0.400106
Target:  5'- cGCGGGGCgGCCCcguCCCCGgGGaCCAAc -3'
miRNA:   3'- -CGCCUUGgUGGGu--GGGGUgUC-GGUUu -5'
5675 3' -58.2 NC_001806.1 + 68210 0.73 0.400106
Target:  5'- cCGGccuucgccAACCGCCaacCCCCACGGCCGAGa -3'
miRNA:   3'- cGCC--------UUGGUGGgu-GGGGUGUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 108547 0.72 0.43498
Target:  5'- uGCGGcuGGCCGCgcccgCCGCUCCGCGGUCAAAc -3'
miRNA:   3'- -CGCC--UUGGUG-----GGUGGGGUGUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 6295 0.72 0.43498
Target:  5'- cGCGGGGgggaaagacCCGCCCACCCCACccaCGAAa -3'
miRNA:   3'- -CGCCUU---------GGUGGGUGGGGUGucgGUUU- -5'
5675 3' -58.2 NC_001806.1 + 123926 0.72 0.43498
Target:  5'- gGCGGccaaacugAACCGCCCGCCCCugcGCAGaucCCAGg -3'
miRNA:   3'- -CGCC--------UUGGUGGGUGGGG---UGUC---GGUUu -5'
5675 3' -58.2 NC_001806.1 + 24907 0.72 0.44397
Target:  5'- gGCGGGcuugGCCACgC-CCCCGCGGCgGGAa -3'
miRNA:   3'- -CGCCU----UGGUGgGuGGGGUGUCGgUUU- -5'
5675 3' -58.2 NC_001806.1 + 136365 0.72 0.453063
Target:  5'- cCGGGGCCGgCgCGCUCCGCGGCCu-- -3'
miRNA:   3'- cGCCUUGGUgG-GUGGGGUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 136040 0.72 0.453063
Target:  5'- cGCGGcACCGgCCACCCCGCGcucGCUg-- -3'
miRNA:   3'- -CGCCuUGGUgGGUGGGGUGU---CGGuuu -5'
5675 3' -58.2 NC_001806.1 + 27225 0.72 0.462258
Target:  5'- uUGGAGCCAgCCCGCCCuCACagggcgGGCCGc- -3'
miRNA:   3'- cGCCUUGGU-GGGUGGG-GUG------UCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 3559 0.72 0.463182
Target:  5'- gGCGGAcaGCCGCCCcagggcggcgaggauCCCCGCGGCg--- -3'
miRNA:   3'- -CGCCU--UGGUGGGu--------------GGGGUGUCGguuu -5'
5675 3' -58.2 NC_001806.1 + 144330 0.72 0.471549
Target:  5'- uGUGGGuauccgGCCcCCCGCCCCGC-GCCGGu -3'
miRNA:   3'- -CGCCU------UGGuGGGUGGGGUGuCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 106132 0.72 0.471549
Target:  5'- aCGcGAGCCuGCCCGCCCCcaccACGGUCGAGc -3'
miRNA:   3'- cGC-CUUGG-UGGGUGGGG----UGUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 94214 0.72 0.471549
Target:  5'- cCGGGGCCuuuCUCACCCCGCuGUCGGu -3'
miRNA:   3'- cGCCUUGGu--GGGUGGGGUGuCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 31119 0.72 0.471549
Target:  5'- gGCuGGAGCCGCCgCACCCUGCuccCCGAGa -3'
miRNA:   3'- -CG-CCUUGGUGG-GUGGGGUGuc-GGUUU- -5'
5675 3' -58.2 NC_001806.1 + 71018 0.71 0.480934
Target:  5'- -aGGAcGCCcCCCcgcaaaGCCCCGCGGCCGAc -3'
miRNA:   3'- cgCCU-UGGuGGG------UGGGGUGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 102837 0.71 0.480934
Target:  5'- --cGAGCCGgUCGCCCCGCGGCCc-- -3'
miRNA:   3'- cgcCUUGGUgGGUGGGGUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 68749 0.71 0.490409
Target:  5'- aGCGcGAACCuuaCCACCCCggcguACAGCCu-- -3'
miRNA:   3'- -CGC-CUUGGug-GGUGGGG-----UGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 55826 0.71 0.490409
Target:  5'- cCGGAcACC-CCCGCCCCG-AGCCAc- -3'
miRNA:   3'- cGCCU-UGGuGGGUGGGGUgUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 18174 0.71 0.499969
Target:  5'- cCGGuuACCACCCuuuagcCCCCGguGCCAAu -3'
miRNA:   3'- cGCCu-UGGUGGGu-----GGGGUguCGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.