miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5675 3' -58.2 NC_001806.1 + 150954 0.66 0.795463
Target:  5'- cCGGAACCgagcccggucgGCCCGCucgcgggCCCACgAGCCGc- -3'
miRNA:   3'- cGCCUUGG-----------UGGGUG-------GGGUG-UCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 148829 0.66 0.78731
Target:  5'- cCGaGACCGCCCccccauccacGCCCUGCGGCCc-- -3'
miRNA:   3'- cGCcUUGGUGGG----------UGGGGUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 85721 0.66 0.78731
Target:  5'- cCGGcacccACCGCCCcgaACCCUGCGGuCCGGAg -3'
miRNA:   3'- cGCCu----UGGUGGG---UGGGGUGUC-GGUUU- -5'
5675 3' -58.2 NC_001806.1 + 113285 0.66 0.78731
Target:  5'- cGUGGAGCUGCCgGggggggacguuCCCC-CGGCCGGc -3'
miRNA:   3'- -CGCCUUGGUGGgU-----------GGGGuGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 82596 0.66 0.78731
Target:  5'- uCGcGAACCGuCCCGCCCaACAGCa--- -3'
miRNA:   3'- cGC-CUUGGU-GGGUGGGgUGUCGguuu -5'
5675 3' -58.2 NC_001806.1 + 57397 0.66 0.78731
Target:  5'- uGCGGAGCauCCCGCgCCuuGGCCGu- -3'
miRNA:   3'- -CGCCUUGguGGGUGgGGugUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 102655 0.66 0.78731
Target:  5'- gGCGGAAUaguggCGCUgGCCCacaUACAGCCGGc -3'
miRNA:   3'- -CGCCUUG-----GUGGgUGGG---GUGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 76352 0.66 0.78731
Target:  5'- gGCaGGggUCACCCugCCCu--GCCcGAg -3'
miRNA:   3'- -CG-CCuuGGUGGGugGGGuguCGGuUU- -5'
5675 3' -58.2 NC_001806.1 + 144999 0.66 0.78731
Target:  5'- -aGGGGCCccgGCCCgggGCCCCACAacgGCCc-- -3'
miRNA:   3'- cgCCUUGG---UGGG---UGGGGUGU---CGGuuu -5'
5675 3' -58.2 NC_001806.1 + 27152 0.66 0.77812
Target:  5'- cGCGGAGCU-CCCgggaGCUCCGCA-CCAAGc -3'
miRNA:   3'- -CGCCUUGGuGGG----UGGGGUGUcGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 23984 0.66 0.77812
Target:  5'- gGCGGGcuguCCugCCugCUgGCGGCCc-- -3'
miRNA:   3'- -CGCCUu---GGugGGugGGgUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 5677 0.66 0.77812
Target:  5'- gGCGGGuggguCCGcgcCCCGCCCCGCAuGgCAu- -3'
miRNA:   3'- -CGCCUu----GGU---GGGUGGGGUGU-CgGUuu -5'
5675 3' -58.2 NC_001806.1 + 80031 0.66 0.77812
Target:  5'- aGCGGcGCCuuACgCGCCCCGCuGUCGc- -3'
miRNA:   3'- -CGCCuUGG--UGgGUGGGGUGuCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 37769 0.66 0.77812
Target:  5'- gGCGGGcGCCuuUCGCUCCGgGGCCGGGg -3'
miRNA:   3'- -CGCCU-UGGugGGUGGGGUgUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 134839 0.66 0.77812
Target:  5'- gGCGGucgccGACCugGCgCACCUCGCAGgCCAGg -3'
miRNA:   3'- -CGCC-----UUGG--UGgGUGGGGUGUC-GGUUu -5'
5675 3' -58.2 NC_001806.1 + 50682 0.66 0.77812
Target:  5'- cGCGGcGGCCACgCGCgCCAUucuGGCCGc- -3'
miRNA:   3'- -CGCC-UUGGUGgGUGgGGUG---UCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 121436 0.66 0.77812
Target:  5'- -gGGGGCCuggugGCaCCuCCCCAgCGGCCAGAu -3'
miRNA:   3'- cgCCUUGG-----UG-GGuGGGGU-GUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 74340 0.66 0.777194
Target:  5'- aGCGGGGCCAgacgcuggacgccCCCgaggACCUgGCGGCCu-- -3'
miRNA:   3'- -CGCCUUGGU-------------GGG----UGGGgUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 8250 0.67 0.768801
Target:  5'- cGauGAGCCACCgCACCCUugGGUg--- -3'
miRNA:   3'- -CgcCUUGGUGG-GUGGGGugUCGguuu -5'
5675 3' -58.2 NC_001806.1 + 52556 0.67 0.768801
Target:  5'- cGCGGGGCCuCCC-CCggacgaCAUGGCCAGc -3'
miRNA:   3'- -CGCCUUGGuGGGuGGg-----GUGUCGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.