Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5675 | 3' | -58.2 | NC_001806.1 | + | 67738 | 1.07 | 0.002115 |
Target: 5'- gGCGGAACCACCCACCCCACAGCCAAAc -3' miRNA: 3'- -CGCCUUGGUGGGUGGGGUGUCGGUUU- -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 30294 | 0.81 | 0.126093 |
Target: 5'- gGCGGAgccgGCCGCCCGCCCCGCGgacgcgcGCCGu- -3' miRNA: 3'- -CGCCU----UGGUGGGUGGGGUGU-------CGGUuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 38708 | 0.8 | 0.147515 |
Target: 5'- gGCGGGGCC-CCCGCCCCACcuccGGCaCAGAc -3' miRNA: 3'- -CGCCUUGGuGGGUGGGGUG----UCG-GUUU- -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 22892 | 0.78 | 0.214818 |
Target: 5'- cCGGGGCCcgGCCCGccagccCCCCGCGGCCGGAg -3' miRNA: 3'- cGCCUUGG--UGGGU------GGGGUGUCGGUUU- -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 47174 | 0.77 | 0.231105 |
Target: 5'- cGCGGAcggcgcuucgccACCGCCC-CCCCGCccGGCCGGGg -3' miRNA: 3'- -CGCCU------------UGGUGGGuGGGGUG--UCGGUUU- -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 80095 | 0.77 | 0.242533 |
Target: 5'- cUGGGACCccGCCgACCCCACGGCCc-- -3' miRNA: 3'- cGCCUUGG--UGGgUGGGGUGUCGGuuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 20574 | 0.77 | 0.248421 |
Target: 5'- cGCGGAcCCACCCGCCCuCGC-GCCc-- -3' miRNA: 3'- -CGCCUuGGUGGGUGGG-GUGuCGGuuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 101118 | 0.76 | 0.252613 |
Target: 5'- cGCGGGggucgucgaccacgGCCAgcacccgcCCCACCUCGCAGCCAGc -3' miRNA: 3'- -CGCCU--------------UGGU--------GGGUGGGGUGUCGGUUu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 12891 | 0.76 | 0.282276 |
Target: 5'- uGCGGcGCCACCguCCCCACgggguccuccaagagGGCCGAAu -3' miRNA: 3'- -CGCCuUGGUGGguGGGGUG---------------UCGGUUU- -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 96531 | 0.76 | 0.286255 |
Target: 5'- cCGGcGCCGCCCGCCCCugGcGCCc-- -3' miRNA: 3'- cGCCuUGGUGGGUGGGGugU-CGGuuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 93895 | 0.76 | 0.286255 |
Target: 5'- cGCGGGagGCCGCCCcgaagagggggACCCCGgggcuCAGCCAGAc -3' miRNA: 3'- -CGCCU--UGGUGGG-----------UGGGGU-----GUCGGUUU- -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 21159 | 0.76 | 0.286255 |
Target: 5'- aCGGGccGCCGCCCACCCCG-AGCCc-- -3' miRNA: 3'- cGCCU--UGGUGGGUGGGGUgUCGGuuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 72565 | 0.75 | 0.292985 |
Target: 5'- cCGGGGCCacACCCG-CCCACAGCCGc- -3' miRNA: 3'- cGCCUUGG--UGGGUgGGGUGUCGGUuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 23131 | 0.75 | 0.306815 |
Target: 5'- cGCGGGACCcgcGCCUgccgaGCUCCGCGGCCGc- -3' miRNA: 3'- -CGCCUUGG---UGGG-----UGGGGUGUCGGUuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 35522 | 0.75 | 0.328486 |
Target: 5'- aGCGGGGCCGCUCACgCCA-AGCCGc- -3' miRNA: 3'- -CGCCUUGGUGGGUGgGGUgUCGGUuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 112881 | 0.75 | 0.328486 |
Target: 5'- -gGGGACCuagucCCCGCCCC-CGGCCAc- -3' miRNA: 3'- cgCCUUGGu----GGGUGGGGuGUCGGUuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 26255 | 0.74 | 0.367069 |
Target: 5'- gGCGGcgGGCaGCCCGggccCCCCGCGGCCGAGa -3' miRNA: 3'- -CGCC--UUGgUGGGU----GGGGUGUCGGUUU- -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 88961 | 0.74 | 0.378416 |
Target: 5'- cGUGGu-CCACgCCGCCCCACaggcgcgagcgccgcGGCCAGAa -3' miRNA: 3'- -CGCCuuGGUG-GGUGGGGUG---------------UCGGUUU- -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 100106 | 0.73 | 0.383351 |
Target: 5'- cGCGGccggcuGACCGCCCGCCUgGCGGuCCGc- -3' miRNA: 3'- -CGCC------UUGGUGGGUGGGgUGUC-GGUuu -5' |
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5675 | 3' | -58.2 | NC_001806.1 | + | 56828 | 0.73 | 0.383351 |
Target: 5'- cCGGGcCCGCCaaCACCgCCGCGGCCAGGg -3' miRNA: 3'- cGCCUuGGUGG--GUGG-GGUGUCGGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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