miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5675 3' -58.2 NC_001806.1 + 77452 0.66 0.814014
Target:  5'- cCGGG--CGUCCGCCCCACccGGCCAAGa -3'
miRNA:   3'- cGCCUugGUGGGUGGGGUG--UCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 72565 0.75 0.292985
Target:  5'- cCGGGGCCacACCCG-CCCACAGCCGc- -3'
miRNA:   3'- cGCCUUGG--UGGGUgGGGUGUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 23131 0.75 0.306815
Target:  5'- cGCGGGACCcgcGCCUgccgaGCUCCGCGGCCGc- -3'
miRNA:   3'- -CGCCUUGG---UGGG-----UGGGGUGUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 35522 0.75 0.328486
Target:  5'- aGCGGGGCCGCUCACgCCA-AGCCGc- -3'
miRNA:   3'- -CGCCUUGGUGGGUGgGGUgUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 112881 0.75 0.328486
Target:  5'- -gGGGACCuagucCCCGCCCC-CGGCCAc- -3'
miRNA:   3'- cgCCUUGGu----GGGUGGGGuGUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 26255 0.74 0.367069
Target:  5'- gGCGGcgGGCaGCCCGggccCCCCGCGGCCGAGa -3'
miRNA:   3'- -CGCC--UUGgUGGGU----GGGGUGUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 88961 0.74 0.378416
Target:  5'- cGUGGu-CCACgCCGCCCCACaggcgcgagcgccgcGGCCAGAa -3'
miRNA:   3'- -CGCCuuGGUG-GGUGGGGUG---------------UCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 100106 0.73 0.383351
Target:  5'- cGCGGccggcuGACCGCCCGCCUgGCGGuCCGc- -3'
miRNA:   3'- -CGCC------UUGGUGGGUGGGgUGUC-GGUuu -5'
5675 3' -58.2 NC_001806.1 + 56828 0.73 0.383351
Target:  5'- cCGGGcCCGCCaaCACCgCCGCGGCCAGGg -3'
miRNA:   3'- cGCCUuGGUGG--GUGG-GGUGUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 96531 0.76 0.286255
Target:  5'- cCGGcGCCGCCCGCCCCugGcGCCc-- -3'
miRNA:   3'- cGCCuUGGUGGGUGGGGugU-CGGuuu -5'
5675 3' -58.2 NC_001806.1 + 93895 0.76 0.286255
Target:  5'- cGCGGGagGCCGCCCcgaagagggggACCCCGgggcuCAGCCAGAc -3'
miRNA:   3'- -CGCCU--UGGUGGG-----------UGGGGU-----GUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 21159 0.76 0.286255
Target:  5'- aCGGGccGCCGCCCACCCCG-AGCCc-- -3'
miRNA:   3'- cGCCU--UGGUGGGUGGGGUgUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 30294 0.81 0.126093
Target:  5'- gGCGGAgccgGCCGCCCGCCCCGCGgacgcgcGCCGu- -3'
miRNA:   3'- -CGCCU----UGGUGGGUGGGGUGU-------CGGUuu -5'
5675 3' -58.2 NC_001806.1 + 38708 0.8 0.147515
Target:  5'- gGCGGGGCC-CCCGCCCCACcuccGGCaCAGAc -3'
miRNA:   3'- -CGCCUUGGuGGGUGGGGUG----UCG-GUUU- -5'
5675 3' -58.2 NC_001806.1 + 22892 0.78 0.214818
Target:  5'- cCGGGGCCcgGCCCGccagccCCCCGCGGCCGGAg -3'
miRNA:   3'- cGCCUUGG--UGGGU------GGGGUGUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 47174 0.77 0.231105
Target:  5'- cGCGGAcggcgcuucgccACCGCCC-CCCCGCccGGCCGGGg -3'
miRNA:   3'- -CGCCU------------UGGUGGGuGGGGUG--UCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 80095 0.77 0.242533
Target:  5'- cUGGGACCccGCCgACCCCACGGCCc-- -3'
miRNA:   3'- cGCCUUGG--UGGgUGGGGUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 20574 0.77 0.248421
Target:  5'- cGCGGAcCCACCCGCCCuCGC-GCCc-- -3'
miRNA:   3'- -CGCCUuGGUGGGUGGG-GUGuCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 101118 0.76 0.252613
Target:  5'- cGCGGGggucgucgaccacgGCCAgcacccgcCCCACCUCGCAGCCAGc -3'
miRNA:   3'- -CGCCU--------------UGGU--------GGGUGGGGUGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 12891 0.76 0.282276
Target:  5'- uGCGGcGCCACCguCCCCACgggguccuccaagagGGCCGAAu -3'
miRNA:   3'- -CGCCuUGGUGGguGGGGUG---------------UCGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.