miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5675 3' -58.2 NC_001806.1 + 1526 0.68 0.674516
Target:  5'- cGCGGGcgcaaaagucccuccGCgGCCCGCgCCACcgGGCCGGg -3'
miRNA:   3'- -CGCCU---------------UGgUGGGUGgGGUG--UCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 1937 0.66 0.805265
Target:  5'- uGCGGcGCagguCCCGCgCCGcCGGCCAGc -3'
miRNA:   3'- -CGCCuUGgu--GGGUGgGGU-GUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 2219 0.66 0.805265
Target:  5'- gGCGG--CCGuguCCgGCCCgCACAGCCGGu -3'
miRNA:   3'- -CGCCuuGGU---GGgUGGG-GUGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 2288 0.69 0.644032
Target:  5'- gGCGG-ACCACuCCggcggcccccccgagGCCCCGCcgccGGCCAGGu -3'
miRNA:   3'- -CGCCuUGGUG-GG---------------UGGGGUG----UCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 2925 0.67 0.720574
Target:  5'- cGCGG-GCCG-CCGCCUCcggGCGGCCGGg -3'
miRNA:   3'- -CGCCuUGGUgGGUGGGG---UGUCGGUUu -5'
5675 3' -58.2 NC_001806.1 + 3559 0.72 0.463182
Target:  5'- gGCGGAcaGCCGCCCcagggcggcgaggauCCCCGCGGCg--- -3'
miRNA:   3'- -CGCCU--UGGUGGGu--------------GGGGUGUCGguuu -5'
5675 3' -58.2 NC_001806.1 + 3861 0.68 0.690662
Target:  5'- gGUGGGGCacgGCCCGCgCCACGcuGCCGGu -3'
miRNA:   3'- -CGCCUUGg--UGGGUGgGGUGU--CGGUUu -5'
5675 3' -58.2 NC_001806.1 + 3979 0.7 0.55888
Target:  5'- cUGGAGCCACCCcagGCCuCCGCGuCCGGGg -3'
miRNA:   3'- cGCCUUGGUGGG---UGG-GGUGUcGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 4044 0.71 0.499969
Target:  5'- cGCGGcgUCGCCCagcucgggcGCCCaCACGGCCGc- -3'
miRNA:   3'- -CGCCuuGGUGGG---------UGGG-GUGUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 4466 0.66 0.796361
Target:  5'- cCGGcGCCGcgcucgacggacCCCGCCCgACGGCCc-- -3'
miRNA:   3'- cGCCuUGGU------------GGGUGGGgUGUCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 4720 0.7 0.547908
Target:  5'- aGCGGGGCCuCCCguucgcgGCCCCG-GGCCGGGg -3'
miRNA:   3'- -CGCCUUGGuGGG-------UGGGGUgUCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 5510 0.71 0.529123
Target:  5'- aGCGGAgGCCGCCgGCCCC-CcGCCc-- -3'
miRNA:   3'- -CGCCU-UGGUGGgUGGGGuGuCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 5677 0.66 0.77812
Target:  5'- gGCGGGuggguCCGcgcCCCGCCCCGCAuGgCAu- -3'
miRNA:   3'- -CGCCUu----GGU---GGGUGGGGUGU-CgGUuu -5'
5675 3' -58.2 NC_001806.1 + 5892 0.7 0.568907
Target:  5'- gGCGGGcggcccaaggGCCGCCCGCCUUGCcGCCc-- -3'
miRNA:   3'- -CGCCU----------UGGUGGGUGGGGUGuCGGuuu -5'
5675 3' -58.2 NC_001806.1 + 6295 0.72 0.43498
Target:  5'- cGCGGGGgggaaagacCCGCCCACCCCACccaCGAAa -3'
miRNA:   3'- -CGCCUU---------GGUGGGUGGGGUGucgGUUU- -5'
5675 3' -58.2 NC_001806.1 + 7779 0.68 0.670464
Target:  5'- uGCGcGAuCC-CCCGCCCC-CGGCUAc- -3'
miRNA:   3'- -CGC-CUuGGuGGGUGGGGuGUCGGUuu -5'
5675 3' -58.2 NC_001806.1 + 8065 0.66 0.805265
Target:  5'- -gGGGACCcgGCCCuaACCCCACcccuguGCUAGGg -3'
miRNA:   3'- cgCCUUGG--UGGG--UGGGGUGu-----CGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 8250 0.67 0.768801
Target:  5'- cGauGAGCCACCgCACCCUugGGUg--- -3'
miRNA:   3'- -CgcCUUGGUGG-GUGGGGugUCGguuu -5'
5675 3' -58.2 NC_001806.1 + 12891 0.76 0.282276
Target:  5'- uGCGGcGCCACCguCCCCACgggguccuccaagagGGCCGAAu -3'
miRNA:   3'- -CGCCuUGGUGGguGGGGUG---------------UCGGUUU- -5'
5675 3' -58.2 NC_001806.1 + 17859 0.69 0.638937
Target:  5'- cGCGGcccccAACCACCCccuggagACCCUgcuCAGCCGGu -3'
miRNA:   3'- -CGCC-----UUGGUGGG-------UGGGGu--GUCGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.