miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 95024 0.66 0.84716
Target:  5'- cGAGuugcaGCAGGAGacCGCCGCgGUGG--CCg -3'
miRNA:   3'- uCUC-----UGUCCUU--GCGGCGgCACCcaGG- -5'
5692 5' -58.4 NC_001806.1 + 20989 0.72 0.497341
Target:  5'- cGAcGGCGGGGGuCGUCGggguCCGUGGGUCUc -3'
miRNA:   3'- uCU-CUGUCCUU-GCGGC----GGCACCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 28519 0.72 0.516269
Target:  5'- cAGAcGCAGGGcccgGgGUCGCCGUGGGaCCc -3'
miRNA:   3'- -UCUcUGUCCU----UgCGGCGGCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 64809 0.71 0.532583
Target:  5'- gGGGGACGGGGuaggccgUGCCcguucccagacgugGCCGgGGGUCCg -3'
miRNA:   3'- -UCUCUGUCCUu------GCGG--------------CGGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 34000 0.71 0.535481
Target:  5'- cAGGGGCGGGGGCGUgGgCGgGGGUgCu -3'
miRNA:   3'- -UCUCUGUCCUUGCGgCgGCaCCCAgG- -5'
5692 5' -58.4 NC_001806.1 + 98694 0.71 0.535481
Target:  5'- ------uGGGGCGCUgGCCGUGGGUCUg -3'
miRNA:   3'- ucucuguCCUUGCGG-CGGCACCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 16290 0.71 0.545181
Target:  5'- gAGGGGCAGGA---UCGCCGgGuGGUCCa -3'
miRNA:   3'- -UCUCUGUCCUugcGGCGGCaC-CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 17937 0.71 0.554937
Target:  5'- -cGGACGGGAGCGCgauuguaugCGCUGgUGcGGUCCc -3'
miRNA:   3'- ucUCUGUCCUUGCG---------GCGGC-AC-CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 51391 0.71 0.554937
Target:  5'- gAGGGGCuccuuAGCGCgGCCGUGGGcgCCu -3'
miRNA:   3'- -UCUCUGucc--UUGCGgCGGCACCCa-GG- -5'
5692 5' -58.4 NC_001806.1 + 151516 0.72 0.497341
Target:  5'- uGGGACugugcgguuGGGACGgCGcCCGUGGGcCCg -3'
miRNA:   3'- uCUCUGu--------CCUUGCgGC-GGCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 65445 0.73 0.460468
Target:  5'- gGGAGcgGGGGAUGCCGCgGcccccGGGUCCu -3'
miRNA:   3'- -UCUCugUCCUUGCGGCGgCa----CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 10391 0.73 0.460468
Target:  5'- gGGGGGCGGGGggagGCGggaGCCGggGGGUCCc -3'
miRNA:   3'- -UCUCUGUCCU----UGCgg-CGGCa-CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 56688 0.76 0.293867
Target:  5'- gGGGGACGGGGGCccgggaaccccggGUCGCUcUGGGUCCu -3'
miRNA:   3'- -UCUCUGUCCUUG-------------CGGCGGcACCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 23945 0.75 0.329431
Target:  5'- cGGGGCcuGGGGGgGCCGCCGgaguGGUCCg -3'
miRNA:   3'- uCUCUG--UCCUUgCGGCGGCac--CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 27849 0.75 0.336766
Target:  5'- cGGGGACGGGGcCGCCccGCgGUGGG-CCu -3'
miRNA:   3'- -UCUCUGUCCUuGCGG--CGgCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 11306 0.74 0.375206
Target:  5'- gGGAGGCguuGGGGugGgUGUCGUgGGGUCCa -3'
miRNA:   3'- -UCUCUG---UCCUugCgGCGGCA-CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 95399 0.73 0.415653
Target:  5'- cGGGGGCGGGGGCgaggacgaagaccGUCGCCGcGGGcCCg -3'
miRNA:   3'- -UCUCUGUCCUUG-------------CGGCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 11854 0.73 0.433786
Target:  5'- uAGGGGCGGGuugguauACGCuCGCCG-GGG-CCa -3'
miRNA:   3'- -UCUCUGUCCu------UGCG-GCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 147273 0.73 0.440814
Target:  5'- aAGAGGC-GGAG-GCCGCCGaggacgucagggGGGUCCc -3'
miRNA:   3'- -UCUCUGuCCUUgCGGCGGCa-----------CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 95439 0.73 0.451476
Target:  5'- gGGGGGCAGGGGC-CCGagaCGUGGGgggacaucgCCa -3'
miRNA:   3'- -UCUCUGUCCUUGcGGCg--GCACCCa--------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.