miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 1496 0.66 0.806003
Target:  5'- -----gGGGGGCGUCGUCGUcGGGcUCCa -3'
miRNA:   3'- ucucugUCCUUGCGGCGGCA-CCC-AGG- -5'
5692 5' -58.4 NC_001806.1 + 2661 0.69 0.654262
Target:  5'- aGGGcGGCGGccgcGGGCGCCGCCGUGuGG-CUg -3'
miRNA:   3'- -UCU-CUGUC----CUUGCGGCGGCAC-CCaGG- -5'
5692 5' -58.4 NC_001806.1 + 2692 0.66 0.836068
Target:  5'- uGGGcccCGGGGGCuGCCGCCGccagccgcccaggGGGUCg -3'
miRNA:   3'- uCUCu--GUCCUUG-CGGCGGCa------------CCCAGg -5'
5692 5' -58.4 NC_001806.1 + 2860 0.7 0.584487
Target:  5'- cGGGGAgGGGGGCGCgggcguccgaGCCGggGGcGUCCg -3'
miRNA:   3'- -UCUCUgUCCUUGCGg---------CGGCa-CC-CAGG- -5'
5692 5' -58.4 NC_001806.1 + 4182 0.68 0.713491
Target:  5'- cGGGGGCGGGGGC-CCGgCGccGGG-CCa -3'
miRNA:   3'- -UCUCUGUCCUUGcGGCgGCa-CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 4370 0.67 0.761106
Target:  5'- cGGAGGCcgcgGGGGuccuCGCCGCCGcccgGGG-CUu -3'
miRNA:   3'- -UCUCUG----UCCUu---GCGGCGGCa---CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 4436 0.66 0.806003
Target:  5'- -cGGGCGGGGGCGgCGuCCGcccgGGGgcugCCg -3'
miRNA:   3'- ucUCUGUCCUUGCgGC-GGCa---CCCa---GG- -5'
5692 5' -58.4 NC_001806.1 + 10391 0.73 0.460468
Target:  5'- gGGGGGCGGGGggagGCGggaGCCGggGGGUCCc -3'
miRNA:   3'- -UCUCUGUCCU----UGCgg-CGGCa-CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 11306 0.74 0.375206
Target:  5'- gGGAGGCguuGGGGugGgUGUCGUgGGGUCCa -3'
miRNA:   3'- -UCUCUG---UCCUugCgGCGGCA-CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 11854 0.73 0.433786
Target:  5'- uAGGGGCGGGuugguauACGCuCGCCG-GGG-CCa -3'
miRNA:   3'- -UCUCUGUCCu------UGCG-GCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 14392 0.68 0.703736
Target:  5'- aGGGGACAcuGGGGCGUgCGUUaagGGGUCCg -3'
miRNA:   3'- -UCUCUGU--CCUUGCG-GCGGca-CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 16290 0.71 0.545181
Target:  5'- gAGGGGCAGGA---UCGCCGgGuGGUCCa -3'
miRNA:   3'- -UCUCUGUCCUugcGGCGGCaC-CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 17937 0.71 0.554937
Target:  5'- -cGGACGGGAGCGCgauuguaugCGCUGgUGcGGUCCc -3'
miRNA:   3'- ucUCUGUCCUUGCG---------GCGGC-AC-CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 18628 0.67 0.77945
Target:  5'- -cGGACuGGGACGCgaG-CGUGuGGUCCg -3'
miRNA:   3'- ucUCUGuCCUUGCGg-CgGCAC-CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 20864 0.66 0.822969
Target:  5'- cAGAGACAGaccgucaGACGCuCGCCGcgccGGGacgCCg -3'
miRNA:   3'- -UCUCUGUCc------UUGCG-GCGGCa---CCCa--GG- -5'
5692 5' -58.4 NC_001806.1 + 20989 0.72 0.497341
Target:  5'- cGAcGGCGGGGGuCGUCGggguCCGUGGGUCUc -3'
miRNA:   3'- uCU-CUGUCCUU-GCGGC----GGCACCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 21290 0.67 0.797292
Target:  5'- cGGGACGGGAGgGCCcCCGcggcGGGcaCCg -3'
miRNA:   3'- uCUCUGUCCUUgCGGcGGCa---CCCa-GG- -5'
5692 5' -58.4 NC_001806.1 + 21757 0.7 0.624311
Target:  5'- cGAGGCGcGG---GCCGUCGggcgGGGUCCg -3'
miRNA:   3'- uCUCUGU-CCuugCGGCGGCa---CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 23057 0.7 0.60436
Target:  5'- cGGcGGCAGcGAgGCCGCCGUGGccgCCg -3'
miRNA:   3'- -UCuCUGUCcUUgCGGCGGCACCca-GG- -5'
5692 5' -58.4 NC_001806.1 + 23108 0.67 0.770337
Target:  5'- cGGGGCccuGGGccccGCGCUGCCGcGGGaCCc -3'
miRNA:   3'- uCUCUGu--CCU----UGCGGCGGCaCCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.