miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 23945 0.75 0.329431
Target:  5'- cGGGGCcuGGGGGgGCCGCCGgaguGGUCCg -3'
miRNA:   3'- uCUCUG--UCCUUgCGGCGGCac--CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 27260 0.67 0.770337
Target:  5'- cGGGGGCGGGAcuggccaaucgGCgGCCGCCagcgcggcgGGGcCCg -3'
miRNA:   3'- -UCUCUGUCCU-----------UG-CGGCGGca-------CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 27849 0.75 0.336766
Target:  5'- cGGGGACGGGGcCGCCccGCgGUGGG-CCu -3'
miRNA:   3'- -UCUCUGUCCUuGCGG--CGgCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 28519 0.72 0.516269
Target:  5'- cAGAcGCAGGGcccgGgGUCGCCGUGGGaCCc -3'
miRNA:   3'- -UCUcUGUCCU----UgCGGCGGCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 28669 0.7 0.6333
Target:  5'- gGGGGugGGGAGgagccgccCGCCauauuugggggacGCCGUGGGaCCc -3'
miRNA:   3'- -UCUCugUCCUU--------GCGG-------------CGGCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 29097 0.66 0.839273
Target:  5'- cGAGACGGG---GCUGCUG-GGG-CCg -3'
miRNA:   3'- uCUCUGUCCuugCGGCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 30029 0.66 0.806003
Target:  5'- cGGAGGCGGG---GCgGCCGaGGGgCCg -3'
miRNA:   3'- -UCUCUGUCCuugCGgCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 30635 0.7 0.59441
Target:  5'- cAGGGcCGGGGggGCGCgGCCaggGUGGGcCCg -3'
miRNA:   3'- -UCUCuGUCCU--UGCGgCGG---CACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 31708 0.66 0.831207
Target:  5'- gGGAGugGGGGuGCGUgGgaGUGGGggugCCa -3'
miRNA:   3'- -UCUCugUCCU-UGCGgCggCACCCa---GG- -5'
5692 5' -58.4 NC_001806.1 + 33123 0.66 0.822969
Target:  5'- cGGGGCccGGAcCGCCGCgGUcGGGggCCc -3'
miRNA:   3'- uCUCUGu-CCUuGCGGCGgCA-CCCa-GG- -5'
5692 5' -58.4 NC_001806.1 + 34000 0.71 0.535481
Target:  5'- cAGGGGCGGGGGCGUgGgCGgGGGUgCu -3'
miRNA:   3'- -UCUCUGUCCUUGCGgCgGCaCCCAgG- -5'
5692 5' -58.4 NC_001806.1 + 37765 0.68 0.72318
Target:  5'- --cGGCGGcGGGCGCCuuucgcuccgggGCCGgggcgcggGGGUCCg -3'
miRNA:   3'- ucuCUGUC-CUUGCGG------------CGGCa-------CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 37989 0.68 0.732795
Target:  5'- uGGGGGC----ACGCCGgCGgGGGUCCg -3'
miRNA:   3'- -UCUCUGuccuUGCGGCgGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 42836 0.68 0.732795
Target:  5'- uGGGuCGGGuuCGCCcgcggGCCugGUGGGUCCc -3'
miRNA:   3'- uCUCuGUCCuuGCGG-----CGG--CACCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 44744 0.68 0.732795
Target:  5'- uGGAGGgGGGGGCGCCaGuuGcGGGaacugCCg -3'
miRNA:   3'- -UCUCUgUCCUUGCGG-CggCaCCCa----GG- -5'
5692 5' -58.4 NC_001806.1 + 48475 0.68 0.742327
Target:  5'- gGGGGACGGGGAUuCC-CCG-GGG-CCg -3'
miRNA:   3'- -UCUCUGUCCUUGcGGcGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 48747 0.67 0.788438
Target:  5'- aGGAGACGGGAccGCGCaaCCaacccacugGGGUCUg -3'
miRNA:   3'- -UCUCUGUCCU--UGCGgcGGca-------CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 51095 0.66 0.839273
Target:  5'- gGGAGACgaGGGGGcCGCCGCCcUGcGGg-- -3'
miRNA:   3'- -UCUCUG--UCCUU-GCGGCGGcAC-CCagg -5'
5692 5' -58.4 NC_001806.1 + 51391 0.71 0.554937
Target:  5'- gAGGGGCuccuuAGCGCgGCCGUGGGcgCCu -3'
miRNA:   3'- -UCUCUGucc--UUGCGgCGGCACCCa-GG- -5'
5692 5' -58.4 NC_001806.1 + 56688 0.76 0.293867
Target:  5'- gGGGGACGGGGGCccgggaaccccggGUCGCUcUGGGUCCu -3'
miRNA:   3'- -UCUCUGUCCUUG-------------CGGCGGcACCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.