miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 151598 0.71 0.564744
Target:  5'- uGGAGACAGaGAGCG-UGCCG-GGGUg- -3'
miRNA:   3'- -UCUCUGUC-CUUGCgGCGGCaCCCAgg -5'
5692 5' -58.4 NC_001806.1 + 151516 0.72 0.497341
Target:  5'- uGGGACugugcgguuGGGACGgCGcCCGUGGGcCCg -3'
miRNA:   3'- uCUCUGu--------CCUUGCgGC-GGCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 151288 0.69 0.674158
Target:  5'- cGGGGCcgGGGGGCgGCgGCgGUGGG-CCg -3'
miRNA:   3'- uCUCUG--UCCUUG-CGgCGgCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 148774 0.69 0.684061
Target:  5'- cGAGG-GGGGGCGCCcccgcaacuGCCG-GGGUCUu -3'
miRNA:   3'- uCUCUgUCCUUGCGG---------CGGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 147797 0.68 0.713491
Target:  5'- gGGGGGCGGagccuggcauGGGCGCCGCgGgGGG-CCu -3'
miRNA:   3'- -UCUCUGUC----------CUUGCGGCGgCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 147474 0.69 0.664222
Target:  5'- cAGAGGCGgcggaggggagcGGGGCGgCGCCGgagGGGgcggcgCCg -3'
miRNA:   3'- -UCUCUGU------------CCUUGCgGCGGCa--CCCa-----GG- -5'
5692 5' -58.4 NC_001806.1 + 147273 0.73 0.440814
Target:  5'- aAGAGGC-GGAG-GCCGCCGaggacgucagggGGGUCCc -3'
miRNA:   3'- -UCUCUGuCCUUgCGGCGGCa-----------CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 142022 0.66 0.806003
Target:  5'- aGGGcGGCgAGGAGCGCCGCCGg----CCc -3'
miRNA:   3'- -UCU-CUG-UCCUUGCGGCGGCacccaGG- -5'
5692 5' -58.4 NC_001806.1 + 141484 0.69 0.6682
Target:  5'- -uAGAguGGGACGCCGCCGccccgcgcuugacggUcaGGGUCg -3'
miRNA:   3'- ucUCUguCCUUGCGGCGGC---------------A--CCCAGg -5'
5692 5' -58.4 NC_001806.1 + 135111 0.69 0.654262
Target:  5'- gGGGGGCGGGGgcaGCGCUGCgUGcUGGacGUCCg -3'
miRNA:   3'- -UCUCUGUCCU---UGCGGCG-GC-ACC--CAGG- -5'
5692 5' -58.4 NC_001806.1 + 122786 0.68 0.72318
Target:  5'- cGGGGGcCAGGAAUuccaGCUugGCCGUGuGGUCg -3'
miRNA:   3'- -UCUCU-GUCCUUG----CGG--CGGCAC-CCAGg -5'
5692 5' -58.4 NC_001806.1 + 115071 0.66 0.822969
Target:  5'- cGuGGCGGGAAa-CCGCC-UGGGgCCg -3'
miRNA:   3'- uCuCUGUCCUUgcGGCGGcACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 111204 0.68 0.72318
Target:  5'- uGGGGAUAGccuGCGCgGCCG-GGG-CCu -3'
miRNA:   3'- -UCUCUGUCcu-UGCGgCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 109486 0.67 0.788438
Target:  5'- uGGGGCGGGGAUGCCGUCaaacaGG-CCg -3'
miRNA:   3'- uCUCUGUCCUUGCGGCGGcac--CCaGG- -5'
5692 5' -58.4 NC_001806.1 + 101489 0.7 0.60436
Target:  5'- cGGGACuGGAGC-CCGCCGUuuacgGGGUa- -3'
miRNA:   3'- uCUCUGuCCUUGcGGCGGCA-----CCCAgg -5'
5692 5' -58.4 NC_001806.1 + 101200 0.66 0.806003
Target:  5'- cGGAGGCAGGGcCGCCcgcaCCGUauccGGaUCCa -3'
miRNA:   3'- -UCUCUGUCCUuGCGGc---GGCA----CCcAGG- -5'
5692 5' -58.4 NC_001806.1 + 100399 0.67 0.770337
Target:  5'- cGGGGGCcGGggUGCCcgauGUCGgaacgGGGUUCa -3'
miRNA:   3'- -UCUCUGuCCuuGCGG----CGGCa----CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 99689 0.7 0.614329
Target:  5'- uGGGGGCAuGGGACGCCGgaCCcUGGGgaggaCCg -3'
miRNA:   3'- -UCUCUGU-CCUUGCGGC--GGcACCCa----GG- -5'
5692 5' -58.4 NC_001806.1 + 98694 0.71 0.535481
Target:  5'- ------uGGGGCGCUgGCCGUGGGUCUg -3'
miRNA:   3'- ucucuguCCUUGCGG-CGGCACCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 95439 0.73 0.451476
Target:  5'- gGGGGGCAGGGGC-CCGagaCGUGGGgggacaucgCCa -3'
miRNA:   3'- -UCUCUGUCCUUGcGGCg--GCACCCa--------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.