miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 71641 0.68 0.720281
Target:  5'- cGGGGGCAuGGGugGCgGaaacaacacuaaccCCGgGGGUCCg -3'
miRNA:   3'- -UCUCUGU-CCUugCGgC--------------GGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 4182 0.68 0.713491
Target:  5'- cGGGGGCGGGGGC-CCGgCGccGGG-CCa -3'
miRNA:   3'- -UCUCUGUCCUUGcGGCgGCa-CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 147797 0.68 0.713491
Target:  5'- gGGGGGCGGagccuggcauGGGCGCCGCgGgGGG-CCu -3'
miRNA:   3'- -UCUCUGUC----------CUUGCGGCGgCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 14392 0.68 0.703736
Target:  5'- aGGGGACAcuGGGGCGUgCGUUaagGGGUCCg -3'
miRNA:   3'- -UCUCUGU--CCUUGCG-GCGGca-CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 148774 0.69 0.684061
Target:  5'- cGAGG-GGGGGCGCCcccgcaacuGCCG-GGGUCUu -3'
miRNA:   3'- uCUCUgUCCUUGCGG---------CGGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 63385 0.69 0.674158
Target:  5'- uGGAGcCGGcGAugGCCGCCcccUGGGUg- -3'
miRNA:   3'- -UCUCuGUC-CUugCGGCGGc--ACCCAgg -5'
5692 5' -58.4 NC_001806.1 + 151288 0.69 0.674158
Target:  5'- cGGGGCcgGGGGGCgGCgGCgGUGGG-CCg -3'
miRNA:   3'- uCUCUG--UCCUUG-CGgCGgCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 141484 0.69 0.6682
Target:  5'- -uAGAguGGGACGCCGCCGccccgcgcuugacggUcaGGGUCg -3'
miRNA:   3'- ucUCUguCCUUGCGGCGGC---------------A--CCCAGg -5'
5692 5' -58.4 NC_001806.1 + 83921 0.69 0.6682
Target:  5'- cGGGGGCGGGGacagcugcuguacucGCGCCGCCGcucgcaacgGGGaaUUCg -3'
miRNA:   3'- -UCUCUGUCCU---------------UGCGGCGGCa--------CCC--AGG- -5'
5692 5' -58.4 NC_001806.1 + 64945 0.69 0.664222
Target:  5'- gAGGGACcaccGGcgucGGCGCCcggGCCGgGGGUCCc -3'
miRNA:   3'- -UCUCUGu---CC----UUGCGG---CGGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 147474 0.69 0.664222
Target:  5'- cAGAGGCGgcggaggggagcGGGGCGgCGCCGgagGGGgcggcgCCg -3'
miRNA:   3'- -UCUCUGU------------CCUUGCgGCGGCa--CCCa-----GG- -5'
5692 5' -58.4 NC_001806.1 + 135111 0.69 0.654262
Target:  5'- gGGGGGCGGGGgcaGCGCUGCgUGcUGGacGUCCg -3'
miRNA:   3'- -UCUCUGUCCU---UGCGGCG-GC-ACC--CAGG- -5'
5692 5' -58.4 NC_001806.1 + 57752 0.69 0.654262
Target:  5'- uGGAGcgGCGGGAcGgGCCGCCGUcccGUCCg -3'
miRNA:   3'- -UCUC--UGUCCU-UgCGGCGGCAcc-CAGG- -5'
5692 5' -58.4 NC_001806.1 + 2661 0.69 0.654262
Target:  5'- aGGGcGGCGGccgcGGGCGCCGCCGUGuGG-CUg -3'
miRNA:   3'- -UCU-CUGUC----CUUGCGGCGGCAC-CCaGG- -5'
5692 5' -58.4 NC_001806.1 + 90840 0.69 0.654262
Target:  5'- cGAGGCGgucguGGGAccCGCCGCCGUGGcaCUg -3'
miRNA:   3'- uCUCUGU-----CCUU--GCGGCGGCACCcaGG- -5'
5692 5' -58.4 NC_001806.1 + 28669 0.7 0.6333
Target:  5'- gGGGGugGGGAGgagccgccCGCCauauuugggggacGCCGUGGGaCCc -3'
miRNA:   3'- -UCUCugUCCUU--------GCGG-------------CGGCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 21757 0.7 0.624311
Target:  5'- cGAGGCGcGG---GCCGUCGggcgGGGUCCg -3'
miRNA:   3'- uCUCUGU-CCuugCGGCGGCa---CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 99689 0.7 0.614329
Target:  5'- uGGGGGCAuGGGACGCCGgaCCcUGGGgaggaCCg -3'
miRNA:   3'- -UCUCUGU-CCUUGCGGC--GGcACCCa----GG- -5'
5692 5' -58.4 NC_001806.1 + 101489 0.7 0.60436
Target:  5'- cGGGACuGGAGC-CCGCCGUuuacgGGGUa- -3'
miRNA:   3'- uCUCUGuCCUUGcGGCGGCA-----CCCAgg -5'
5692 5' -58.4 NC_001806.1 + 23057 0.7 0.60436
Target:  5'- cGGcGGCAGcGAgGCCGCCGUGGccgCCg -3'
miRNA:   3'- -UCuCUGUCcUUgCGGCGGCACCca-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.