miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5692 5' -58.4 NC_001806.1 + 21290 0.67 0.797292
Target:  5'- cGGGACGGGAGgGCCcCCGcggcGGGcaCCg -3'
miRNA:   3'- uCUCUGUCCUUgCGGcGGCa---CCCa-GG- -5'
5692 5' -58.4 NC_001806.1 + 109486 0.67 0.788438
Target:  5'- uGGGGCGGGGAUGCCGUCaaacaGG-CCg -3'
miRNA:   3'- uCUCUGUCCUUGCGGCGGcac--CCaGG- -5'
5692 5' -58.4 NC_001806.1 + 48747 0.67 0.788438
Target:  5'- aGGAGACGGGAccGCGCaaCCaacccacugGGGUCUg -3'
miRNA:   3'- -UCUCUGUCCU--UGCGgcGGca-------CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 72504 0.67 0.77945
Target:  5'- cGAGAUcgcgggccuggGGGAgcccuGCGUCGgCGUGGGcCCc -3'
miRNA:   3'- uCUCUG-----------UCCU-----UGCGGCgGCACCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 67963 0.67 0.77945
Target:  5'- aAGAcGCGGGGuacucgcaACGCCuGCgG-GGGUCCu -3'
miRNA:   3'- -UCUcUGUCCU--------UGCGG-CGgCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 18628 0.67 0.77945
Target:  5'- -cGGACuGGGACGCgaG-CGUGuGGUCCg -3'
miRNA:   3'- ucUCUGuCCUUGCGg-CgGCAC-CCAGG- -5'
5692 5' -58.4 NC_001806.1 + 84437 0.67 0.770337
Target:  5'- cGGGGACGGGGGCcgguuugugaGCCugcuucggGCCGcgGGGcCCg -3'
miRNA:   3'- -UCUCUGUCCUUG----------CGG--------CGGCa-CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 23108 0.67 0.770337
Target:  5'- cGGGGCccuGGGccccGCGCUGCCGcGGGaCCc -3'
miRNA:   3'- uCUCUGu--CCU----UGCGGCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 100399 0.67 0.770337
Target:  5'- cGGGGGCcGGggUGCCcgauGUCGgaacgGGGUUCa -3'
miRNA:   3'- -UCUCUGuCCuuGCGG----CGGCa----CCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 65784 0.67 0.770337
Target:  5'- cGAGA-GGGGACGUCGgC--GGGUCCg -3'
miRNA:   3'- uCUCUgUCCUUGCGGCgGcaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 64653 0.67 0.770337
Target:  5'- uGAGGCgAGGGGgGCUGCCGaauGUCCu -3'
miRNA:   3'- uCUCUG-UCCUUgCGGCGGCaccCAGG- -5'
5692 5' -58.4 NC_001806.1 + 27260 0.67 0.770337
Target:  5'- cGGGGGCGGGAcuggccaaucgGCgGCCGCCagcgcggcgGGGcCCg -3'
miRNA:   3'- -UCUCUGUCCU-----------UG-CGGCGGca-------CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 4370 0.67 0.761106
Target:  5'- cGGAGGCcgcgGGGGuccuCGCCGCCGcccgGGG-CUu -3'
miRNA:   3'- -UCUCUG----UCCUu---GCGGCGGCa---CCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 48475 0.68 0.742327
Target:  5'- gGGGGACGGGGAUuCC-CCG-GGG-CCg -3'
miRNA:   3'- -UCUCUGUCCUUGcGGcGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 44744 0.68 0.732795
Target:  5'- uGGAGGgGGGGGCGCCaGuuGcGGGaacugCCg -3'
miRNA:   3'- -UCUCUgUCCUUGCGG-CggCaCCCa----GG- -5'
5692 5' -58.4 NC_001806.1 + 42836 0.68 0.732795
Target:  5'- uGGGuCGGGuuCGCCcgcggGCCugGUGGGUCCc -3'
miRNA:   3'- uCUCuGUCCuuGCGG-----CGG--CACCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 37989 0.68 0.732795
Target:  5'- uGGGGGC----ACGCCGgCGgGGGUCCg -3'
miRNA:   3'- -UCUCUGuccuUGCGGCgGCaCCCAGG- -5'
5692 5' -58.4 NC_001806.1 + 111204 0.68 0.72318
Target:  5'- uGGGGAUAGccuGCGCgGCCG-GGG-CCu -3'
miRNA:   3'- -UCUCUGUCcu-UGCGgCGGCaCCCaGG- -5'
5692 5' -58.4 NC_001806.1 + 122786 0.68 0.72318
Target:  5'- cGGGGGcCAGGAAUuccaGCUugGCCGUGuGGUCg -3'
miRNA:   3'- -UCUCU-GUCCUUG----CGG--CGGCAC-CCAGg -5'
5692 5' -58.4 NC_001806.1 + 37765 0.68 0.72318
Target:  5'- --cGGCGGcGGGCGCCuuucgcuccgggGCCGgggcgcggGGGUCCg -3'
miRNA:   3'- ucuCUGUC-CUUGCGG------------CGGCa-------CCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.