miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 33623 0.69 0.48086
Target:  5'- gGGgcgGGGGGCCggauaCCCacacgggCGGggGGgGGg -3'
miRNA:   3'- -CCaaaCCCCCGGg----GGG-------GCCuuCCgCC- -5'
5695 5' -63 NC_001806.1 + 34265 0.7 0.389012
Target:  5'- ---cUGGGGGCUUauauguggggUCCCGGG-GGCGGg -3'
miRNA:   3'- ccaaACCCCCGGG----------GGGGCCUuCCGCC- -5'
5695 5' -63 NC_001806.1 + 37922 0.67 0.578212
Target:  5'- ---aUGGGGGCgCCggggccguccguccaCCCCGccccGGGGCGGg -3'
miRNA:   3'- ccaaACCCCCG-GG---------------GGGGCc---UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 39299 0.66 0.606968
Target:  5'- ----aGGGGGUaugugaucgcacaugCCCCCCGGGAuaugaaaGCGGu -3'
miRNA:   3'- ccaaaCCCCCG---------------GGGGGGCCUUc------CGCC- -5'
5695 5' -63 NC_001806.1 + 41621 0.67 0.574398
Target:  5'- gGGggUGuGGGGCCCUgCUGuuccguGGCGGc -3'
miRNA:   3'- -CCaaAC-CCCCGGGGgGGCcuu---CCGCC- -5'
5695 5' -63 NC_001806.1 + 41682 0.7 0.378845
Target:  5'- aGGUcugUGGGGGCggcgugCCgcccgccguguccuCCCCGGGAcuGGCGGg -3'
miRNA:   3'- -CCAa--ACCCCCG------GG--------------GGGGCCUU--CCGCC- -5'
5695 5' -63 NC_001806.1 + 43759 0.66 0.622376
Target:  5'- --cUUGGGGcacccccacacGCCgCCCCCGGAGguuacgcuGGCGc -3'
miRNA:   3'- ccaAACCCC-----------CGG-GGGGGCCUU--------CCGCc -5'
5695 5' -63 NC_001806.1 + 45217 0.71 0.343603
Target:  5'- aGGgacgauGGGCCCCCCCaGAagggucugucGGGCGGg -3'
miRNA:   3'- -CCaaacc-CCCGGGGGGGcCU----------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 45307 0.73 0.282894
Target:  5'- ----cGGGGaGCCgCCCggcgaGGAGGGCGGg -3'
miRNA:   3'- ccaaaCCCC-CGGgGGGg----CCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 47026 0.66 0.654179
Target:  5'- cGUUUGGGGGUUuucucuucccgcgCCgUCGGGcgucccacacucucuGGGCGGg -3'
miRNA:   3'- cCAAACCCCCGG-------------GGgGGCCU---------------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 49597 0.67 0.555421
Target:  5'- cGGcg-GcGGGGCCCguuCCCCGcccAAGGUGGa -3'
miRNA:   3'- -CCaaaC-CCCCGGG---GGGGCc--UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 52452 0.68 0.536631
Target:  5'- uGGUUc-GGGGCCgCCCUGGcc-GCGGa -3'
miRNA:   3'- -CCAAacCCCCGGgGGGGCCuucCGCC- -5'
5695 5' -63 NC_001806.1 + 52551 0.71 0.3509
Target:  5'- uGGUccGcGGGGCCuCCCCCGGAcgacauGGCc- -3'
miRNA:   3'- -CCAaaC-CCCCGG-GGGGGCCUu-----CCGcc -5'
5695 5' -63 NC_001806.1 + 52586 0.68 0.527318
Target:  5'- cGGcccggGGGGGCaUCgCgCGGggGGUGGg -3'
miRNA:   3'- -CCaaa--CCCCCG-GGgGgGCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 52941 0.74 0.236342
Target:  5'- gGGUgUGGGGaCCCgCCCCGGAGGGa-- -3'
miRNA:   3'- -CCAaACCCCcGGG-GGGGCCUUCCgcc -5'
5695 5' -63 NC_001806.1 + 53233 0.66 0.62816
Target:  5'- ----gGGGGGauccgcccuauuuuCCCCCCCGGGccgcaccGGGCc- -3'
miRNA:   3'- ccaaaCCCCC--------------GGGGGGGCCU-------UCCGcc -5'
5695 5' -63 NC_001806.1 + 54677 0.66 0.632016
Target:  5'- cGGUgaGGGGucGUCCCCCaGGAaccAGGCa- -3'
miRNA:   3'- -CCAaaCCCC--CGGGGGGgCCU---UCCGcc -5'
5695 5' -63 NC_001806.1 + 55077 0.66 0.632016
Target:  5'- gGGgcUGGaGGGUCagagaCGGggGGCGGa -3'
miRNA:   3'- -CCaaACC-CCCGGgggg-GCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 55304 0.71 0.334281
Target:  5'- aGG-UUGGGGGCgcugUcguacaccaggaguCCCCCGGGugGGGCGGu -3'
miRNA:   3'- -CCaAACCCCCG----G--------------GGGGGCCU--UCCGCC- -5'
5695 5' -63 NC_001806.1 + 55635 0.66 0.641657
Target:  5'- gGGUUguugGGGGGCUggCCggCUCGGuggGGGUGGu -3'
miRNA:   3'- -CCAAa---CCCCCGG--GG--GGGCCu--UCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.