miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 21198 0.67 0.555421
Target:  5'- ----gGGGGGCCCUcggguggggCgCGGAgacggaggaGGGCGGg -3'
miRNA:   3'- ccaaaCCCCCGGGG---------GgGCCU---------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 21290 0.73 0.282894
Target:  5'- cGGgacgGGaGGGCCCCCgCGGcGGGCa- -3'
miRNA:   3'- -CCaaa-CC-CCCGGGGGgGCCuUCCGcc -5'
5695 5' -63 NC_001806.1 + 23541 0.66 0.660911
Target:  5'- ---cUGGGcGGCUggcggcggcagCCCCCGGGGcccagccacacGGCGGc -3'
miRNA:   3'- ccaaACCC-CCGG-----------GGGGGCCUU-----------CCGCC- -5'
5695 5' -63 NC_001806.1 + 24801 0.66 0.651291
Target:  5'- ----cGGGGGCCCUgCCGcc-GGCGc -3'
miRNA:   3'- ccaaaCCCCCGGGGgGGCcuuCCGCc -5'
5695 5' -63 NC_001806.1 + 25425 0.76 0.178707
Target:  5'- cGGUggUGGugcgcGGGCgCCCCCGGAGGGUuuGGa -3'
miRNA:   3'- -CCAa-ACC-----CCCGgGGGGGCCUUCCG--CC- -5'
5695 5' -63 NC_001806.1 + 25851 0.66 0.621413
Target:  5'- uGGUUucaccugUGGcagcccGGGCCCCCCgCGGgcGcGCGc -3'
miRNA:   3'- -CCAA-------ACC------CCCGGGGGG-GCCuuC-CGCc -5'
5695 5' -63 NC_001806.1 + 27247 0.71 0.336415
Target:  5'- ----gGGcGGGCCgCCUCGGG-GGCGGg -3'
miRNA:   3'- ccaaaCC-CCCGGgGGGGCCUuCCGCC- -5'
5695 5' -63 NC_001806.1 + 27758 0.66 0.650328
Target:  5'- gGGUucuUUGGgggacaccggguuGGGCCCCCaaauCGGggGcCGGg -3'
miRNA:   3'- -CCA---AACC-------------CCCGGGGGg---GCCuuCcGCC- -5'
5695 5' -63 NC_001806.1 + 27825 0.68 0.503402
Target:  5'- -cUUUGGGGGCgCCggguugguCCCCGGGGacggggccgccccgcGGUGGg -3'
miRNA:   3'- ccAAACCCCCG-GG--------GGGGCCUU---------------CCGCC- -5'
5695 5' -63 NC_001806.1 + 27900 0.69 0.479078
Target:  5'- --aUUGGGGgaaucgucacugccGCCCCUuuGGGgaggggaaAGGCGGg -3'
miRNA:   3'- ccaAACCCC--------------CGGGGGggCCU--------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 28217 0.66 0.651291
Target:  5'- ----gGGGGGCgCCauaUUGGggGGCGc -3'
miRNA:   3'- ccaaaCCCCCGgGGg--GGCCuuCCGCc -5'
5695 5' -63 NC_001806.1 + 28285 0.7 0.404998
Target:  5'- --gUUGGGGGaCCCCCacucauacaCGGGAGcCGGg -3'
miRNA:   3'- ccaAACCCCC-GGGGGg--------GCCUUCcGCC- -5'
5695 5' -63 NC_001806.1 + 28695 0.73 0.258183
Target:  5'- -aUUUGGGGGacgccgugggaCCCCCgacuccggugcguCUGGAGGGCGGg -3'
miRNA:   3'- ccAAACCCCC-----------GGGGG-------------GGCCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 29144 0.7 0.421392
Target:  5'- cGGg--GGGGaGCCCCCCCcgcgaGGAAGacccCGGc -3'
miRNA:   3'- -CCaaaCCCC-CGGGGGGG-----CCUUCc---GCC- -5'
5695 5' -63 NC_001806.1 + 29179 0.73 0.282894
Target:  5'- aGUUgcgGGGGcGCCCCCCCucgagaGGAcGGgGGg -3'
miRNA:   3'- cCAAa--CCCC-CGGGGGGG------CCUuCCgCC- -5'
5695 5' -63 NC_001806.1 + 29974 0.73 0.270612
Target:  5'- cGGg--GGGcgucuGGCCCCUCCGGggGGguUGGg -3'
miRNA:   3'- -CCaaaCCC-----CCGGGGGGGCCuuCC--GCC- -5'
5695 5' -63 NC_001806.1 + 30263 0.69 0.455345
Target:  5'- -----cGGGGCCCggcccccgcgCCCCGGcccccGGGGCGGa -3'
miRNA:   3'- ccaaacCCCCGGG----------GGGGCC-----UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 30411 0.66 0.603122
Target:  5'- cGGcucggGGGGGCCgggCgUGGAGGGUGGg -3'
miRNA:   3'- -CCaaa--CCCCCGGgg-GgGCCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 30915 0.66 0.651291
Target:  5'- -----cGGGGCCgUCCCCGc-GGGCGGc -3'
miRNA:   3'- ccaaacCCCCGG-GGGGGCcuUCCGCC- -5'
5695 5' -63 NC_001806.1 + 33140 0.7 0.381175
Target:  5'- cGGUc-GGGGGCCCCucguCCCGGGccguacGCGGc -3'
miRNA:   3'- -CCAaaCCCCCGGGG----GGGCCUuc----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.