miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 29179 0.73 0.282894
Target:  5'- aGUUgcgGGGGcGCCCCCCCucgagaGGAcGGgGGg -3'
miRNA:   3'- cCAAa--CCCC-CGGGGGGG------CCUuCCgCC- -5'
5695 5' -63 NC_001806.1 + 21290 0.73 0.282894
Target:  5'- cGGgacgGGaGGGCCCCCgCGGcGGGCa- -3'
miRNA:   3'- -CCaaa-CC-CCCGGGGGgGCCuUCCGcc -5'
5695 5' -63 NC_001806.1 + 18505 0.73 0.282894
Target:  5'- aGGgcUGGGaGCCCUCCUGGggGGUc- -3'
miRNA:   3'- -CCaaACCCcCGGGGGGGCCuuCCGcc -5'
5695 5' -63 NC_001806.1 + 150716 0.73 0.289198
Target:  5'- ----aGGcGGCCCgCCCUGuGAGGGCGGg -3'
miRNA:   3'- ccaaaCCcCCGGG-GGGGC-CUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 108721 0.73 0.289198
Target:  5'- ----cGGGGGagaucaCCCCCCCGGGGacGGCGa -3'
miRNA:   3'- ccaaaCCCCC------GGGGGGGCCUU--CCGCc -5'
5695 5' -63 NC_001806.1 + 55701 0.72 0.295612
Target:  5'- gGGUcgaugUGGGGGUgaCCUCCGGGcuGGCGGc -3'
miRNA:   3'- -CCAa----ACCCCCGg-GGGGGCCUu-CCGCC- -5'
5695 5' -63 NC_001806.1 + 149676 0.72 0.315516
Target:  5'- ---gUGGGGGUCCCCCaacauGGCGGc -3'
miRNA:   3'- ccaaACCCCCGGGGGGgccuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 147698 0.72 0.315516
Target:  5'- ----cGGGGGCgggCCCCGGA-GGCGGc -3'
miRNA:   3'- ccaaaCCCCCGgg-GGGGCCUuCCGCC- -5'
5695 5' -63 NC_001806.1 + 55304 0.71 0.334281
Target:  5'- aGG-UUGGGGGCgcugUcguacaccaggaguCCCCCGGGugGGGCGGu -3'
miRNA:   3'- -CCaAACCCCCG----G--------------GGGGGCCU--UCCGCC- -5'
5695 5' -63 NC_001806.1 + 4958 0.71 0.336415
Target:  5'- ----cGGGGGCCCUCCCGucccgccGGGCGu -3'
miRNA:   3'- ccaaaCCCCCGGGGGGGCcu-----UCCGCc -5'
5695 5' -63 NC_001806.1 + 27247 0.71 0.336415
Target:  5'- ----gGGcGGGCCgCCUCGGG-GGCGGg -3'
miRNA:   3'- ccaaaCC-CCCGGgGGGGCCUuCCGCC- -5'
5695 5' -63 NC_001806.1 + 2439 0.71 0.336415
Target:  5'- ----aGGGGGCCaaagaggcggCCCCCGGcggccccgugGGGGUGGg -3'
miRNA:   3'- ccaaaCCCCCGG----------GGGGGCC----------UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 45217 0.71 0.343603
Target:  5'- aGGgacgauGGGCCCCCCCaGAagggucugucGGGCGGg -3'
miRNA:   3'- -CCaaacc-CCCGGGGGGGcCU----------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 52551 0.71 0.3509
Target:  5'- uGGUccGcGGGGCCuCCCCCGGAcgacauGGCc- -3'
miRNA:   3'- -CCAaaC-CCCCGG-GGGGGCCUu-----CCGcc -5'
5695 5' -63 NC_001806.1 + 41682 0.7 0.378845
Target:  5'- aGGUcugUGGGGGCggcgugCCgcccgccguguccuCCCCGGGAcuGGCGGg -3'
miRNA:   3'- -CCAa--ACCCCCG------GG--------------GGGGCCUU--CCGCC- -5'
5695 5' -63 NC_001806.1 + 113883 0.7 0.381175
Target:  5'- gGGUUagcgcgGGGGGCCacgaCCCCGuGuacgcGGCGGc -3'
miRNA:   3'- -CCAAa-----CCCCCGGg---GGGGC-Cuu---CCGCC- -5'
5695 5' -63 NC_001806.1 + 33140 0.7 0.381175
Target:  5'- cGGUc-GGGGGCCCCucguCCCGGGccguacGCGGc -3'
miRNA:   3'- -CCAaaCCCCCGGGG----GGGCCUuc----CGCC- -5'
5695 5' -63 NC_001806.1 + 34265 0.7 0.389012
Target:  5'- ---cUGGGGGCUUauauguggggUCCCGGG-GGCGGg -3'
miRNA:   3'- ccaaACCCCCGGG----------GGGGCCUuCCGCC- -5'
5695 5' -63 NC_001806.1 + 85962 0.7 0.389012
Target:  5'- --cUUGcGGGGCuuggacgcgCCUCCCGGggGGuCGGc -3'
miRNA:   3'- ccaAAC-CCCCG---------GGGGGGCCuuCC-GCC- -5'
5695 5' -63 NC_001806.1 + 2815 0.7 0.389012
Target:  5'- cGGg--GGcGGGCUCgggCCCCGGggGcGUGGa -3'
miRNA:   3'- -CCaaaCC-CCCGGG---GGGGCCuuC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.