miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 39299 0.66 0.606968
Target:  5'- ----aGGGGGUaugugaucgcacaugCCCCCCGGGAuaugaaaGCGGu -3'
miRNA:   3'- ccaaaCCCCCG---------------GGGGGGCCUUc------CGCC- -5'
5695 5' -63 NC_001806.1 + 122573 0.66 0.603122
Target:  5'- ----gGGGGGCCCgugguCUCCGuGAGGCuGGa -3'
miRNA:   3'- ccaaaCCCCCGGG-----GGGGCcUUCCG-CC- -5'
5695 5' -63 NC_001806.1 + 113144 0.66 0.603122
Target:  5'- ---cUGGGGGCagCgCCUGGcccacGGGCGGg -3'
miRNA:   3'- ccaaACCCCCGg-GgGGGCCu----UCCGCC- -5'
5695 5' -63 NC_001806.1 + 20653 0.66 0.603122
Target:  5'- ----cGGccacGGGCCCCCggcgugCCGGcgucGGGGCGGg -3'
miRNA:   3'- ccaaaCC----CCCGGGGG------GGCC----UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 30411 0.66 0.603122
Target:  5'- cGGcucggGGGGGCCgggCgUGGAGGGUGGg -3'
miRNA:   3'- -CCaaa--CCCCCGGgg-GgGCCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 145260 0.66 0.603122
Target:  5'- ----aGGGGGCgCCCCagaGGcuAAGGuCGGc -3'
miRNA:   3'- ccaaaCCCCCGgGGGGg--CC--UUCC-GCC- -5'
5695 5' -63 NC_001806.1 + 134245 0.67 0.597358
Target:  5'- cGGgg-GGGcGGCCCCggcagCCGGAaugaggagcucgucgGGGUGGc -3'
miRNA:   3'- -CCaaaCCC-CCGGGGg----GGCCU---------------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 96379 0.67 0.59352
Target:  5'- ----aGGGcGCCCCCgCGcGggGGCGc -3'
miRNA:   3'- ccaaaCCCcCGGGGGgGC-CuuCCGCc -5'
5695 5' -63 NC_001806.1 + 93714 0.67 0.59352
Target:  5'- gGGggUGGGGGaa-CCuaGGGcgGGGCGGg -3'
miRNA:   3'- -CCaaACCCCCgggGGggCCU--UCCGCC- -5'
5695 5' -63 NC_001806.1 + 132686 0.67 0.59352
Target:  5'- ---cUGGGGGCCUggCCCgCGGuggGGGCcaGGg -3'
miRNA:   3'- ccaaACCCCCGGG--GGG-GCCu--UCCG--CC- -5'
5695 5' -63 NC_001806.1 + 144814 0.67 0.59352
Target:  5'- cGGgacGaGGGGCCCCCgaCCGc--GGCGGu -3'
miRNA:   3'- -CCaaaC-CCCCGGGGG--GGCcuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 4401 0.67 0.587771
Target:  5'- gGGcUUGGGcgcGGCCUCggagaggggggguggCCCGGGcggGGGCGGc -3'
miRNA:   3'- -CCaAACCC---CCGGGG---------------GGGCCU---UCCGCC- -5'
5695 5' -63 NC_001806.1 + 5937 0.67 0.583944
Target:  5'- cGGcg-GGcGGGaCCgCCCCaaGggGGCGGg -3'
miRNA:   3'- -CCaaaCC-CCC-GG-GGGGgcCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 151526 0.67 0.583944
Target:  5'- cGG-UUGGGacGGCgCCCgUGGGcccGGGCGGc -3'
miRNA:   3'- -CCaAACCC--CCGgGGGgGCCU---UCCGCC- -5'
5695 5' -63 NC_001806.1 + 148776 0.67 0.582988
Target:  5'- aGGg--GGGGcGCCCCCgcaacugCCGGGgucuuccucgcGGGgGGg -3'
miRNA:   3'- -CCaaaCCCC-CGGGGG-------GGCCU-----------UCCgCC- -5'
5695 5' -63 NC_001806.1 + 37922 0.67 0.578212
Target:  5'- ---aUGGGGGCgCCggggccguccguccaCCCCGccccGGGGCGGg -3'
miRNA:   3'- ccaaACCCCCG-GG---------------GGGGCc---UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 41621 0.67 0.574398
Target:  5'- gGGggUGuGGGGCCCUgCUGuuccguGGCGGc -3'
miRNA:   3'- -CCaaAC-CCCCGGGGgGGCcuu---CCGCC- -5'
5695 5' -63 NC_001806.1 + 14357 0.67 0.564888
Target:  5'- ----aGGGGGacggcaaagCCCCCCaGggGGCuGGg -3'
miRNA:   3'- ccaaaCCCCCg--------GGGGGGcCuuCCG-CC- -5'
5695 5' -63 NC_001806.1 + 100979 0.67 0.559202
Target:  5'- aGGUagUUGGugaucagguacaacaGGcGCuCCUCCCGGGAGaGCGGc -3'
miRNA:   3'- -CCA--AACC---------------CC-CG-GGGGGGCCUUC-CGCC- -5'
5695 5' -63 NC_001806.1 + 21198 0.67 0.555421
Target:  5'- ----gGGGGGCCCUcggguggggCgCGGAgacggaggaGGGCGGg -3'
miRNA:   3'- ccaaaCCCCCGGGG---------GgGCCU---------UCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.