miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 49597 0.67 0.555421
Target:  5'- cGGcg-GcGGGGCCCguuCCCCGcccAAGGUGGa -3'
miRNA:   3'- -CCaaaC-CCCCGGG---GGGGCc--UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 147225 0.67 0.546
Target:  5'- ----aGGcGGCCCCCgCGGggGuCGGg -3'
miRNA:   3'- ccaaaCCcCCGGGGGgGCCuuCcGCC- -5'
5695 5' -63 NC_001806.1 + 52452 0.68 0.536631
Target:  5'- uGGUUc-GGGGCCgCCCUGGcc-GCGGa -3'
miRNA:   3'- -CCAAacCCCCGGgGGGGCCuucCGCC- -5'
5695 5' -63 NC_001806.1 + 52586 0.68 0.527318
Target:  5'- cGGcccggGGGGGCaUCgCgCGGggGGUGGg -3'
miRNA:   3'- -CCaaa--CCCCCG-GGgGgGCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 144586 0.68 0.508881
Target:  5'- gGGUgccgcGGcucuccGGGCCCCCCUGcagccGGGGCGGc -3'
miRNA:   3'- -CCAaa---CC------CCCGGGGGGGCc----UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 11701 0.68 0.508881
Target:  5'- ---aUGGGGGUUCgugguugaCCCCGGGAGGUuguGGu -3'
miRNA:   3'- ccaaACCCCCGGG--------GGGGCCUUCCG---CC- -5'
5695 5' -63 NC_001806.1 + 4124 0.68 0.508881
Target:  5'- ----cGGGcGCCCCCCagaGGcccGGGCGGc -3'
miRNA:   3'- ccaaaCCCcCGGGGGGg--CCu--UCCGCC- -5'
5695 5' -63 NC_001806.1 + 27825 0.68 0.503402
Target:  5'- -cUUUGGGGGCgCCggguugguCCCCGGGGacggggccgccccgcGGUGGg -3'
miRNA:   3'- ccAAACCCCCG-GG--------GGGGCCUU---------------CCGCC- -5'
5695 5' -63 NC_001806.1 + 113296 0.68 0.499763
Target:  5'- cGGg--GGGGGacguUCCCCCGGccGGCccGGg -3'
miRNA:   3'- -CCaaaCCCCCg---GGGGGGCCuuCCG--CC- -5'
5695 5' -63 NC_001806.1 + 148180 0.68 0.49072
Target:  5'- cGUggGGGGGCgcggggcgUCCggCGGggGGCGGg -3'
miRNA:   3'- cCAaaCCCCCG--------GGGggGCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 20311 0.68 0.49072
Target:  5'- ----gGGGcGGUCCCgCCCgccggccaaugGGggGGCGGc -3'
miRNA:   3'- ccaaaCCC-CCGGGG-GGG-----------CCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 5771 0.68 0.49072
Target:  5'- aGGgg-GcGGGGCCCgggccccgacuUCCCGGuucGGCGGu -3'
miRNA:   3'- -CCaaaC-CCCCGGG-----------GGGGCCuu-CCGCC- -5'
5695 5' -63 NC_001806.1 + 6772 0.69 0.481752
Target:  5'- ----aGGGGGCgUgaggaCCGGGAGGCGGc -3'
miRNA:   3'- ccaaaCCCCCGgGgg---GGCCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 33623 0.69 0.48086
Target:  5'- gGGgcgGGGGGCCggauaCCCacacgggCGGggGGgGGg -3'
miRNA:   3'- -CCaaaCCCCCGGg----GGG-------GCCuuCCgCC- -5'
5695 5' -63 NC_001806.1 + 27900 0.69 0.479078
Target:  5'- --aUUGGGGgaaucgucacugccGCCCCUuuGGGgaggggaaAGGCGGg -3'
miRNA:   3'- ccaAACCCC--------------CGGGGGggCCU--------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 149801 0.69 0.472865
Target:  5'- ---cUGGGGGCggCCCUCaGGccGGCGGg -3'
miRNA:   3'- ccaaACCCCCG--GGGGGgCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 95382 0.69 0.472865
Target:  5'- ----cGGGGGUUgggagCUCCCGGG-GGCGGg -3'
miRNA:   3'- ccaaaCCCCCGG-----GGGGGCCUuCCGCC- -5'
5695 5' -63 NC_001806.1 + 89256 0.69 0.464062
Target:  5'- ----cGGGGGUCCCCggcuggcuCCGcGAGGGcCGGc -3'
miRNA:   3'- ccaaaCCCCCGGGGG--------GGC-CUUCC-GCC- -5'
5695 5' -63 NC_001806.1 + 30263 0.69 0.455345
Target:  5'- -----cGGGGCCCggcccccgcgCCCCGGcccccGGGGCGGa -3'
miRNA:   3'- ccaaacCCCCGGG----------GGGGCC-----UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 56689 0.69 0.450157
Target:  5'- gGGgacGGGGGCCCgggaaccccgggucgCUcuggguccuCCGGggGGCGGc -3'
miRNA:   3'- -CCaaaCCCCCGGG---------------GG---------GGCCuuCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.