miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 2439 0.71 0.336415
Target:  5'- ----aGGGGGCCaaagaggcggCCCCCGGcggccccgugGGGGUGGg -3'
miRNA:   3'- ccaaaCCCCCGG----------GGGGGCC----------UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 2815 0.7 0.389012
Target:  5'- cGGg--GGcGGGCUCgggCCCCGGggGcGUGGa -3'
miRNA:   3'- -CCaaaCC-CCCGGG---GGGGCCuuC-CGCC- -5'
5695 5' -63 NC_001806.1 + 3525 0.75 0.205785
Target:  5'- ----cGGGGucgucGCCCCCCgCGGGggAGGCGGg -3'
miRNA:   3'- ccaaaCCCC-----CGGGGGG-GCCU--UCCGCC- -5'
5695 5' -63 NC_001806.1 + 4124 0.68 0.508881
Target:  5'- ----cGGGcGCCCCCCagaGGcccGGGCGGc -3'
miRNA:   3'- ccaaaCCCcCGGGGGGg--CCu--UCCGCC- -5'
5695 5' -63 NC_001806.1 + 4401 0.67 0.587771
Target:  5'- gGGcUUGGGcgcGGCCUCggagaggggggguggCCCGGGcggGGGCGGc -3'
miRNA:   3'- -CCaAACCC---CCGGGG---------------GGGCCU---UCCGCC- -5'
5695 5' -63 NC_001806.1 + 4958 0.71 0.336415
Target:  5'- ----cGGGGGCCCUCCCGucccgccGGGCGu -3'
miRNA:   3'- ccaaaCCCCCGGGGGGGCcu-----UCCGCc -5'
5695 5' -63 NC_001806.1 + 5771 0.68 0.49072
Target:  5'- aGGgg-GcGGGGCCCgggccccgacuUCCCGGuucGGCGGu -3'
miRNA:   3'- -CCaaaC-CCCCGGG-----------GGGGCCuu-CCGCC- -5'
5695 5' -63 NC_001806.1 + 5937 0.67 0.583944
Target:  5'- cGGcg-GGcGGGaCCgCCCCaaGggGGCGGg -3'
miRNA:   3'- -CCaaaCC-CCC-GG-GGGGgcCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 6078 0.7 0.429738
Target:  5'- ----cGGGGGCgggCCCGGgcGGCGGg -3'
miRNA:   3'- ccaaaCCCCCGgggGGGCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 6772 0.69 0.481752
Target:  5'- ----aGGGGGCgUgaggaCCGGGAGGCGGc -3'
miRNA:   3'- ccaaaCCCCCGgGgg---GGCCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 10367 0.69 0.436484
Target:  5'- ----cGGGGGCgcugggccaagaCCUCgGGggGGCGGg -3'
miRNA:   3'- ccaaaCCCCCGg-----------GGGGgCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 11701 0.68 0.508881
Target:  5'- ---aUGGGGGUUCgugguugaCCCCGGGAGGUuguGGu -3'
miRNA:   3'- ccaaACCCCCGGG--------GGGGCCUUCCG---CC- -5'
5695 5' -63 NC_001806.1 + 14357 0.67 0.564888
Target:  5'- ----aGGGGGacggcaaagCCCCCCaGggGGCuGGg -3'
miRNA:   3'- ccaaaCCCCCg--------GGGGGGcCuuCCG-CC- -5'
5695 5' -63 NC_001806.1 + 16860 0.77 0.15484
Target:  5'- aGGUUUGGGGGUCUCC---GggGGCGGg -3'
miRNA:   3'- -CCAAACCCCCGGGGGggcCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 17161 0.82 0.068391
Target:  5'- cGGUcgcuccaaGGGCCCCCCCgGGAAGGCGGg -3'
miRNA:   3'- -CCAaacc----CCCGGGGGGG-CCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 18505 0.73 0.282894
Target:  5'- aGGgcUGGGaGCCCUCCUGGggGGUc- -3'
miRNA:   3'- -CCaaACCCcCGGGGGGGCCuuCCGcc -5'
5695 5' -63 NC_001806.1 + 19111 0.7 0.413145
Target:  5'- cGGggUGGGGGCCCggggcugcguuUCCCGGGuAGacCGGa -3'
miRNA:   3'- -CCaaACCCCCGGG-----------GGGGCCU-UCc-GCC- -5'
5695 5' -63 NC_001806.1 + 20311 0.68 0.49072
Target:  5'- ----gGGGcGGUCCCgCCCgccggccaaugGGggGGCGGc -3'
miRNA:   3'- ccaaaCCC-CCGGGG-GGG-----------CCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 20653 0.66 0.603122
Target:  5'- ----cGGccacGGGCCCCCggcgugCCGGcgucGGGGCGGg -3'
miRNA:   3'- ccaaaCC----CCCGGGGG------GGCC----UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 20709 0.78 0.12443
Target:  5'- cGUUcggGGuGGGCCCgCCgGGggGGCGGg -3'
miRNA:   3'- cCAAa--CC-CCCGGGgGGgCCuuCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.