miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 23541 0.66 0.660911
Target:  5'- ---cUGGGcGGCUggcggcggcagCCCCCGGGGcccagccacacGGCGGc -3'
miRNA:   3'- ccaaACCC-CCGG-----------GGGGGCCUU-----------CCGCC- -5'
5695 5' -63 NC_001806.1 + 106693 0.74 0.236342
Target:  5'- ----cGGGGGCuCUUCCCGGGcccccGGGCGGc -3'
miRNA:   3'- ccaaaCCCCCG-GGGGGGCCU-----UCCGCC- -5'
5695 5' -63 NC_001806.1 + 74925 0.74 0.238509
Target:  5'- cGUUcgGGGGGCgCCCCCUGaGGuuacggcggcgcugcGGGCGGa -3'
miRNA:   3'- cCAAa-CCCCCG-GGGGGGC-CU---------------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 86045 0.74 0.241241
Target:  5'- cGGg--GGGGGCgggcucgUCCCCUGGGGcGGCGGc -3'
miRNA:   3'- -CCaaaCCCCCG-------GGGGGGCCUU-CCGCC- -5'
5695 5' -63 NC_001806.1 + 72512 0.74 0.243999
Target:  5'- cGGgccugGGGGaGCCcugcgucggcgugggCCCCCGGGAGGgGGu -3'
miRNA:   3'- -CCaaa--CCCC-CGG---------------GGGGGCCUUCCgCC- -5'
5695 5' -63 NC_001806.1 + 28695 0.73 0.258183
Target:  5'- -aUUUGGGGGacgccgugggaCCCCCgacuccggugcguCUGGAGGGCGGg -3'
miRNA:   3'- ccAAACCCCC-----------GGGGG-------------GGCCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 29974 0.73 0.270612
Target:  5'- cGGg--GGGcgucuGGCCCCUCCGGggGGguUGGg -3'
miRNA:   3'- -CCaaaCCC-----CCGGGGGGGCCuuCC--GCC- -5'
5695 5' -63 NC_001806.1 + 147776 0.73 0.276699
Target:  5'- cGGacgcgGGGGGCCCggggCGGggGGCGGa -3'
miRNA:   3'- -CCaaa--CCCCCGGGggg-GCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 18505 0.73 0.282894
Target:  5'- aGGgcUGGGaGCCCUCCUGGggGGUc- -3'
miRNA:   3'- -CCaaACCCcCGGGGGGGCCuuCCGcc -5'
5695 5' -63 NC_001806.1 + 52941 0.74 0.236342
Target:  5'- gGGUgUGGGGaCCCgCCCCGGAGGGa-- -3'
miRNA:   3'- -CCAaACCCCcGGG-GGGGCCUUCCgcc -5'
5695 5' -63 NC_001806.1 + 147161 0.74 0.235803
Target:  5'- ----aGGGcaccgacGGCCCCgCCCGaGGAGGCGGa -3'
miRNA:   3'- ccaaaCCC-------CCGGGG-GGGC-CUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 104966 0.74 0.225754
Target:  5'- --gUUGGGGGCCCUUCCGGAGGaCa- -3'
miRNA:   3'- ccaAACCCCCGGGGGGGCCUUCcGcc -5'
5695 5' -63 NC_001806.1 + 17161 0.82 0.068391
Target:  5'- cGGUcgcuccaaGGGCCCCCCCgGGAAGGCGGg -3'
miRNA:   3'- -CCAaacc----CCCGGGGGGG-CCUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 20709 0.78 0.12443
Target:  5'- cGUUcggGGuGGGCCCgCCgGGggGGCGGg -3'
miRNA:   3'- cCAAa--CC-CCCGGGgGGgCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 151431 0.77 0.151154
Target:  5'- ----cGGGGGCCCaCCggCGGggGGCGGc -3'
miRNA:   3'- ccaaaCCCCCGGG-GGg-GCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 16860 0.77 0.15484
Target:  5'- aGGUUUGGGGGUCUCC---GggGGCGGg -3'
miRNA:   3'- -CCAAACCCCCGGGGGggcCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 151274 0.76 0.170409
Target:  5'- cGGgcggUGGGGGCCggggCCGGggGGCGGc -3'
miRNA:   3'- -CCaa--ACCCCCGGggg-GGCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 25425 0.76 0.178707
Target:  5'- cGGUggUGGugcgcGGGCgCCCCCGGAGGGUuuGGa -3'
miRNA:   3'- -CCAa-ACC-----CCCGgGGGGGCCUUCCG--CC- -5'
5695 5' -63 NC_001806.1 + 3525 0.75 0.205785
Target:  5'- ----cGGGGucgucGCCCCCCgCGGGggAGGCGGg -3'
miRNA:   3'- ccaaaCCCC-----CGGGGGG-GCCU--UCCGCC- -5'
5695 5' -63 NC_001806.1 + 65298 0.74 0.225754
Target:  5'- aGGag-GGGGGCCCCCaaGGGccucGGUGGg -3'
miRNA:   3'- -CCaaaCCCCCGGGGGggCCUu---CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.