miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 5' -63 NC_001806.1 + 151526 0.67 0.583944
Target:  5'- cGG-UUGGGacGGCgCCCgUGGGcccGGGCGGc -3'
miRNA:   3'- -CCaAACCC--CCGgGGGgGCCU---UCCGCC- -5'
5695 5' -63 NC_001806.1 + 151431 0.77 0.151154
Target:  5'- ----cGGGGGCCCaCCggCGGggGGCGGc -3'
miRNA:   3'- ccaaaCCCCCGGG-GGg-GCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 151274 0.76 0.170409
Target:  5'- cGGgcggUGGGGGCCggggCCGGggGGCGGc -3'
miRNA:   3'- -CCaa--ACCCCCGGggg-GGCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 150716 0.73 0.289198
Target:  5'- ----aGGcGGCCCgCCCUGuGAGGGCGGg -3'
miRNA:   3'- ccaaaCCcCCGGG-GGGGC-CUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 150662 0.7 0.421392
Target:  5'- uGG-UUGGccGGGCCCCgCCGcGcuGGCGGc -3'
miRNA:   3'- -CCaAACC--CCCGGGGgGGC-CuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 149801 0.69 0.472865
Target:  5'- ---cUGGGGGCggCCCUCaGGccGGCGGg -3'
miRNA:   3'- ccaaACCCCCG--GGGGGgCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 149712 0.66 0.612743
Target:  5'- aGGgucGGGGGUCCCCCaacauGGCGc -3'
miRNA:   3'- -CCaaaCCCCCGGGGGGgccuuCCGCc -5'
5695 5' -63 NC_001806.1 + 149676 0.72 0.315516
Target:  5'- ---gUGGGGGUCCCCCaacauGGCGGc -3'
miRNA:   3'- ccaaACCCCCGGGGGGgccuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 148776 0.67 0.582988
Target:  5'- aGGg--GGGGcGCCCCCgcaacugCCGGGgucuuccucgcGGGgGGg -3'
miRNA:   3'- -CCaaaCCCC-CGGGGG-------GGCCU-----------UCCgCC- -5'
5695 5' -63 NC_001806.1 + 148180 0.68 0.49072
Target:  5'- cGUggGGGGGCgcggggcgUCCggCGGggGGCGGg -3'
miRNA:   3'- cCAaaCCCCCG--------GGGggGCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 148122 0.66 0.641657
Target:  5'- cGGcugGGGGGCUgcgugagacgCCCCgcccgucaCGGggGGCGcGg -3'
miRNA:   3'- -CCaaaCCCCCGG----------GGGG--------GCCuuCCGC-C- -5'
5695 5' -63 NC_001806.1 + 147776 0.73 0.276699
Target:  5'- cGGacgcgGGGGGCCCggggCGGggGGCGGa -3'
miRNA:   3'- -CCaaa--CCCCCGGGggg-GCCuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 147698 0.72 0.315516
Target:  5'- ----cGGGGGCgggCCCCGGA-GGCGGc -3'
miRNA:   3'- ccaaaCCCCCGgg-GGGGCCUuCCGCC- -5'
5695 5' -63 NC_001806.1 + 147225 0.67 0.546
Target:  5'- ----aGGcGGCCCCCgCGGggGuCGGg -3'
miRNA:   3'- ccaaaCCcCCGGGGGgGCCuuCcGCC- -5'
5695 5' -63 NC_001806.1 + 147161 0.74 0.235803
Target:  5'- ----aGGGcaccgacGGCCCCgCCCGaGGAGGCGGa -3'
miRNA:   3'- ccaaaCCC-------CCGGGG-GGGC-CUUCCGCC- -5'
5695 5' -63 NC_001806.1 + 145260 0.66 0.603122
Target:  5'- ----aGGGGGCgCCCCagaGGcuAAGGuCGGc -3'
miRNA:   3'- ccaaaCCCCCGgGGGGg--CC--UUCC-GCC- -5'
5695 5' -63 NC_001806.1 + 144814 0.67 0.59352
Target:  5'- cGGgacGaGGGGCCCCCgaCCGc--GGCGGu -3'
miRNA:   3'- -CCaaaC-CCCCGGGGG--GGCcuuCCGCC- -5'
5695 5' -63 NC_001806.1 + 144586 0.68 0.508881
Target:  5'- gGGUgccgcGGcucuccGGGCCCCCCUGcagccGGGGCGGc -3'
miRNA:   3'- -CCAaa---CC------CCCGGGGGGGCc----UUCCGCC- -5'
5695 5' -63 NC_001806.1 + 134245 0.67 0.597358
Target:  5'- cGGgg-GGGcGGCCCCggcagCCGGAaugaggagcucgucgGGGUGGc -3'
miRNA:   3'- -CCaaaCCC-CCGGGGg----GGCCU---------------UCCGCC- -5'
5695 5' -63 NC_001806.1 + 132686 0.67 0.59352
Target:  5'- ---cUGGGGGCCUggCCCgCGGuggGGGCcaGGg -3'
miRNA:   3'- ccaaACCCCCGGG--GGG-GCCu--UCCG--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.