miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 3' -55.2 NC_001806.1 + 2724 0.67 0.897848
Target:  5'- aGGggGucGGGGCCCuCGGcgGGCcggCGCg -3'
miRNA:   3'- cUCuuCuuCUCCGGG-GCU--UCGca-GCG- -5'
5697 3' -55.2 NC_001806.1 + 2811 0.67 0.909797
Target:  5'- uGGGcGGggGcgggcucGGGCCCCGggGgCGUggaggggggCGCg -3'
miRNA:   3'- -CUCuUCuuC-------UCCGGGGCuuC-GCA---------GCG- -5'
5697 3' -55.2 NC_001806.1 + 2860 0.69 0.804336
Target:  5'- cGGGGAGggGGGcGCgggcguccgagCCgGggGCGUcCGCg -3'
miRNA:   3'- -CUCUUCuuCUC-CG-----------GGgCuuCGCA-GCG- -5'
5697 3' -55.2 NC_001806.1 + 4080 0.77 0.363086
Target:  5'- cGGGgcGcccGAGGCCUCGAaccGGCGUCGCg -3'
miRNA:   3'- -CUCuuCuu-CUCCGGGGCU---UCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 4304 0.67 0.884362
Target:  5'- ----uGAAGcGGCCCgu-GGCGUCGCg -3'
miRNA:   3'- cucuuCUUCuCCGGGgcuUCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 4421 0.75 0.485854
Target:  5'- aGAGggGggGuGGCCCgGGcgggggcGGCGUcCGCc -3'
miRNA:   3'- -CUCuuCuuCuCCGGGgCU-------UCGCA-GCG- -5'
5697 3' -55.2 NC_001806.1 + 4828 0.7 0.738552
Target:  5'- cGGGgcGgcGAGGCCgCGGggucgGGCGUCGg -3'
miRNA:   3'- -CUCuuCuuCUCCGGgGCU-----UCGCAGCg -5'
5697 3' -55.2 NC_001806.1 + 6569 0.68 0.869975
Target:  5'- cGGAGGAGGGGGCUCacccGCGUuCGUg -3'
miRNA:   3'- cUCUUCUUCUCCGGGgcuuCGCA-GCG- -5'
5697 3' -55.2 NC_001806.1 + 9782 0.7 0.738552
Target:  5'- --uGGGGAGGGGCCCCGAcGUG-CGg -3'
miRNA:   3'- cucUUCUUCUCCGGGGCUuCGCaGCg -5'
5697 3' -55.2 NC_001806.1 + 10397 0.68 0.869975
Target:  5'- cGGGggGAggcgggagccgGGGGGUCCCGcuGGCGggagUGCc -3'
miRNA:   3'- -CUCuuCU-----------UCUCCGGGGCu-UCGCa---GCG- -5'
5697 3' -55.2 NC_001806.1 + 11834 0.67 0.876559
Target:  5'- cGAGggGGuGGAGGCCUgguuaGggGCGgguugguauacgcUCGCc -3'
miRNA:   3'- -CUCuuCU-UCUCCGGGg----CuuCGC-------------AGCG- -5'
5697 3' -55.2 NC_001806.1 + 13141 0.66 0.922003
Target:  5'- gGGGGAGAGGcAGGCUgaCGggGgGaugCGCa -3'
miRNA:   3'- -CUCUUCUUC-UCCGGg-GCuuCgCa--GCG- -5'
5697 3' -55.2 NC_001806.1 + 14594 0.69 0.804336
Target:  5'- cGGGuGGGuucuGAGGCCCgGAAGuCG-CGCa -3'
miRNA:   3'- -CUCuUCUu---CUCCGGGgCUUC-GCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 16620 0.69 0.786193
Target:  5'- cGGggGAGGGauguggucguuGGCCCCGAuaaggGGaccgGUCGCg -3'
miRNA:   3'- cUCuuCUUCU-----------CCGGGGCU-----UCg---CAGCG- -5'
5697 3' -55.2 NC_001806.1 + 20402 0.66 0.922003
Target:  5'- cGGGAccGGGGGGCCCgGGgacggccaacgGGCG-CGCg -3'
miRNA:   3'- -CUCUucUUCUCCGGGgCU-----------UCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 21193 0.66 0.932641
Target:  5'- -cGAGcGGGGGGCCCUcGGGUGgggCGCg -3'
miRNA:   3'- cuCUUcUUCUCCGGGGcUUCGCa--GCG- -5'
5697 3' -55.2 NC_001806.1 + 21290 0.66 0.932641
Target:  5'- cGGGAcGGGAGGGcCCCCGcGGCGg-GCa -3'
miRNA:   3'- -CUCU-UCUUCUCcGGGGCuUCGCagCG- -5'
5697 3' -55.2 NC_001806.1 + 21529 0.71 0.698699
Target:  5'- -cGAAcGGGAGGCCCCGcuacGCGgCGCg -3'
miRNA:   3'- cuCUUcUUCUCCGGGGCuu--CGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 22129 0.69 0.821849
Target:  5'- -----uGGGGGGCgCCCGAGGCGgaggaggCGCg -3'
miRNA:   3'- cucuucUUCUCCG-GGGCUUCGCa------GCG- -5'
5697 3' -55.2 NC_001806.1 + 23945 0.73 0.58612
Target:  5'- cGGGGccuGggGGGGCCgCCGGAGUGgucCGCc -3'
miRNA:   3'- -CUCUu--CuuCUCCGG-GGCUUCGCa--GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.