miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 3' -55.2 NC_001806.1 + 99585 0.66 0.937599
Target:  5'- gGGGggGAAcgcGGGCUCCGucgguagagGGGCG-CGCg -3'
miRNA:   3'- -CUCuuCUUc--UCCGGGGC---------UUCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 56686 0.73 0.596339
Target:  5'- gGGGggGAcGGGGGCCCgGGAaccccGgGUCGCu -3'
miRNA:   3'- -CUCuuCU-UCUCCGGGgCUU-----CgCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 112734 0.73 0.596339
Target:  5'- cGAGAAGcuggucuuucuGGAGGCCCUGGAGaagCGCa -3'
miRNA:   3'- -CUCUUCu----------UCUCCGGGGCUUCgcaGCG- -5'
5697 3' -55.2 NC_001806.1 + 65293 0.72 0.626096
Target:  5'- gGAGGAGGagGGGGGCCCCcaagggccucgguGggGaCGUCGg -3'
miRNA:   3'- -CUCUUCU--UCUCCGGGG-------------CuuC-GCAGCg -5'
5697 3' -55.2 NC_001806.1 + 38578 0.72 0.627124
Target:  5'- --cGGGGAGAGGCaCCGAAGCGUgacCGUg -3'
miRNA:   3'- cucUUCUUCUCCGgGGCUUCGCA---GCG- -5'
5697 3' -55.2 NC_001806.1 + 56938 0.72 0.647679
Target:  5'- -cGAcGAacAGGGGCCCCGggGCGagGa -3'
miRNA:   3'- cuCUuCU--UCUCCGGGGCuuCGCagCg -5'
5697 3' -55.2 NC_001806.1 + 77950 0.72 0.668185
Target:  5'- uGGGggGGugacgcGGcGGCCCCGggGcCGcCGCu -3'
miRNA:   3'- -CUCuuCU------UCuCCGGGGCuuC-GCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 130050 0.72 0.672274
Target:  5'- aGGggGAgcuacugauuuacauGGAcGGCUCCGggGCG-CGCu -3'
miRNA:   3'- cUCuuCU---------------UCU-CCGGGGCuuCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 130457 0.71 0.687557
Target:  5'- cGGGAGcuGcggugccGGGaUCCCGAGGCGUCGCu -3'
miRNA:   3'- cUCUUCuuC-------UCC-GGGGCUUCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 23945 0.73 0.58612
Target:  5'- cGGGGccuGggGGGGCCgCCGGAGUGgucCGCc -3'
miRNA:   3'- -CUCUu--CuuCUCCGG-GGCUUCGCa--GCG- -5'
5697 3' -55.2 NC_001806.1 + 51096 0.73 0.575935
Target:  5'- gGAGAcGAGGGGGCCgCCGcccuGCGggCGCa -3'
miRNA:   3'- -CUCUuCUUCUCCGG-GGCuu--CGCa-GCG- -5'
5697 3' -55.2 NC_001806.1 + 147195 0.73 0.565791
Target:  5'- cGGAGGAGGAcgcGGCCCCGGcggcggaagaGGCGgccccCGCg -3'
miRNA:   3'- cUCUUCUUCU---CCGGGGCU----------UCGCa----GCG- -5'
5697 3' -55.2 NC_001806.1 + 35503 0.78 0.339557
Target:  5'- gGAGAGGgcGAGGCgUCGGAGCGgggcCGCu -3'
miRNA:   3'- -CUCUUCuuCUCCGgGGCUUCGCa---GCG- -5'
5697 3' -55.2 NC_001806.1 + 4080 0.77 0.363086
Target:  5'- cGGGgcGcccGAGGCCUCGAaccGGCGUCGCg -3'
miRNA:   3'- -CUCuuCuu-CUCCGGGGCU---UCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 147270 0.77 0.396176
Target:  5'- aGGAAGAggcGGAGGCCgCCGAGGaCGUCa- -3'
miRNA:   3'- cUCUUCU---UCUCCGG-GGCUUC-GCAGcg -5'
5697 3' -55.2 NC_001806.1 + 93910 0.76 0.431147
Target:  5'- -cGAAGAGGGGGaCCCCGggGC-UCaGCc -3'
miRNA:   3'- cuCUUCUUCUCC-GGGGCuuCGcAG-CG- -5'
5697 3' -55.2 NC_001806.1 + 26833 0.75 0.477289
Target:  5'- -cGggGAGGGGGCgCCGGAGCccccCGCg -3'
miRNA:   3'- cuCuuCUUCUCCGgGGCUUCGca--GCG- -5'
5697 3' -55.2 NC_001806.1 + 147691 0.75 0.477289
Target:  5'- cGGGGcgcGGggGcGGGCCCCGGaggcGGCGcUCGCa -3'
miRNA:   3'- -CUCU---UCuuC-UCCGGGGCU----UCGC-AGCG- -5'
5697 3' -55.2 NC_001806.1 + 4421 0.75 0.485854
Target:  5'- aGAGggGggGuGGCCCgGGcgggggcGGCGUcCGCc -3'
miRNA:   3'- -CUCuuCuuCuCCGGGgCU-------UCGCA-GCG- -5'
5697 3' -55.2 NC_001806.1 + 38139 0.74 0.544647
Target:  5'- -cGggGGAGcaagacggucgccGGGCCCCGAGGCG-CGa -3'
miRNA:   3'- cuCuuCUUC-------------UCCGGGGCUUCGCaGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.